GgaINT0042397 @ galGal4
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
netrin receptor UNC5B precursor [Source:RefSeq peptide;Acc:NP_001026396]
Coordinates
chr6:11359069-11360275:+
Coord C1 exon
chr6:11359069-11359247
Coord A exon
chr6:11359248-11359727
Coord C2 exon
chr6:11359728-11360275
Length
480 bp
Sequences
Splice sites
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
3' ss Seq
TTTCTGCTTCTCCTGTGCAGGTA
3' ss Score
11.62
Exon sequences
Seq C1 exon
CATGCCAACTCCTTCGACACCCTCCACTCGCACAACAGCAGTGCCCCCACCACCCAGCTGGGACCCTACGCCTTCAAAATCCCCCTCTCCATCCGGCAGAAGATCTGCAACAGCCTGGATGCTCCCAACTCCAGGGGGAACGACTGGAGACTTCTCGCCCAGAAACTTTCCATGGACCG
Seq A exon
GTGGGTCTCCCTGAGCTTAGCTCTGTGCTCTGTCCATGCTAGATTGCATCTAGTCAGGTTATATTCATCCACAGAAGTCCACCTAGAGATACAGAGATATTTGCTCATAGTTATTTCCATCCATATACATGTGCTGTGGTCTGGATCTCTCCTCATTTTGGAGAGGACATCACATGATCTCCATGCATGGAGATGAGCACAGCCCATCTGAGCTCATGTCCAAGGCCCAAAGGAAGGGAGGGGCCGTGGTCAATGATTTCAGCGAAACAAAGCTTGCACTGCTTTTGCATGAATGCTGGCTACGAATTCTAAAAACCTAGACAGTGGTTCAAGGGCTTTGGCATTTGCATCATGGCATTCCCATCATGGTTCACATTGCAAAGAGGTTGGCTGCTCTGATAGCATCCACCCTTCCATCCCCAAAGGATATTTCTCCTTTGATATTTCAACCTGCATCTTCTTTCTGCTTCTCCTGTGCAG
Seq C2 exon
GTATCTGAACTACTTTGCCACCAAAGCCAGCCCCACTGGGGTGATCCTGGACTTATGGGAAGCCGAGCACCAAGATGATGGCGATCTCAACACCTTGGCCAGTGCCTTAGAAGAGATGGGCAAGAGCGAGATGCTGGTGGTCATGGCCACGGAGGGCGACTGCTGATAGTGCTCCCTTGCTCCAGGGGGATGGTGAAGGGGAACCTTCCCCAGCACCTGTCCCTGCATGGGGGCTGAATGAGGAAGGGCCGAGGGCCCCGCTTGTCCCTCCCCACATCACTGTCAGCCTTACAGACCGATCCTCAGCGTTTACAAGCAATTCAAGTGTTACACGGCATTCCTCCTCCTCCTCCTCTCGGGTGGCATTGGTAATGCTGGAGGAACCGGGGCTTCTTAAGCCGAGGCTTTCCTTCTCCTCTGGGTTCCTTCCCATCTGGTTCTCCTCCTCCTTTGATAGCATTTCTGCGTTGAAGAGACGAGTACAACCTAGGCAAGCAGCTTATTTCTGTCAAAGGCTTCAGACAGCTTCATAAGGCAAGTAGGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(34.2=45.0)
A:
NA
C2:
PF0053117=Death=PD(64.6=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGACTTCTCGCCCAGAAA
R:
ACGCTGAGGATCGGTCTGTAA
Band lengths:
344-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]