RnoINT0160589 @ rn6
Intron Retention
Gene
ENSRNOG00000059840 | Unc5a
Description
unc-5 netrin receptor A [Source:RGD Symbol;Acc:621755]
Coordinates
chr17:10153994-10154480:-
Coord C1 exon
chr17:10154302-10154480
Coord A exon
chr17:10154160-10154301
Coord C2 exon
chr17:10153994-10154159
Length
142 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
AGACTGTGTCTTTTCTCCAGCCA
3' ss Score
6.68
Exon sequences
Seq C1 exon
GACACAAGGTTTGCTGAATTGTTGGCTCTGGAGAGTGAAGGGGGGGTCCCAGCCCTGGTGGGCCCCAGTGCCTTCAAGATCCCCTTCCTCATTCGGCAAAAGATCATCGCCAGTCTGGACCCACCCTGCAGCCGGGGCGCCGACTGGAGAACTCTAGCCCAGAAACTTCACCTGGACAG
Seq A exon
GTGGGTGGCGCTAGGCAGAGGGACGCTGGCTGAGCAAGTGAGGCAGCCGGGAGGTTTACAGTCTCTGCGCCCCAACCGCTAGGGTATCTGAGGGCAGCCTGGAGTGAGGCCAGGCTGCTGACAGACTGTGTCTTTTCTCCAG
Seq C2 exon
CCATCTTAGCTTCTTTGCCTCCAAGCCCAGCCCTACAGCCATGATCCTCAACCTATGGGAGGCACGGCACTTCCCCAACGGCAACCTCGGCCAGCTGGCAGCAGCTGTGGCCGGACTGGGCCAACCAGATGCTGGCCTCTTCACGGTGTCGGAGGCCGAGTGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059840:ENSRNOT00000087397:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(36.0=45.0)
A:
NA
C2:
PF0053117=Death=PD(62.7=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTCCTCATTCGGCAAAA
R:
CGTGAAGAGGCCAGCATCTG
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]