BtaINT0157551 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014897 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr7:39687052-39689740:+
Coord C1 exon
chr7:39687052-39687354
Coord A exon
chr7:39687355-39689652
Coord C2 exon
chr7:39689653-39689740
Length
2298 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGGCCCCTCCTCTGTCACAGGCA
3' ss Score
8.77
Exon sequences
Seq C1 exon
ACAGTCCCCATCTGCTCACCATCCAGCCAGACCTCAGCACCACCACCACCACCTACCAGGGCAGTCTGTGTCCCCGGCAAGATGGGCCCAGCCCCAAGTTCCAGCTCACCAACGGGCACCTGCTCAGCCCACTGGGCAGCGGCCGCCACACGCTGCACCACAGCTCGCCCACCTCGGAGGCGGAGGACTTCGTCTCCCGCCTCTCCACCCAGAACTACTTCCGCTCCCTGCCCCGCGGCACCAGCAACATGGCCTATGGGACCTTCAACTTCCTCGGGGGCCGGCTGATGATCCCTAATACAG
Seq A exon
GTGGGTAACACCCGTGGGTTGCCCCCAGGGAGCTCTAGGAGGCAAGACTAACATGAGTCCCTCCTGGAGGAGGGTGGGACAGCCTTGACGTTCCTCCAGTGCCTCTCAGCCTCACCGTGAGAGCTGGGCCAGCCCAGCAAGGAAAGAGGACAGAGTACTGGTAAGGATCCAGTCTCTGGGATTGGCACTGAGACGGAGGCCAGGGCTGTCTCCCGTCTGTTGCCCAAGGACACAGTATTACTGTCCATTCATCTGCATAGCCAGCCAGCCTGTGTGTGCTGGGCCCTAGGCCCCAGGGAGCTGGGGGAACTAGTGGAGAGAGAGCAGAGGAAAAACATCCGGACAGGGGCTTTTCCACCCAGCACCTCACAGAAACCCCTAGGACATCTGAGAAAGAGCCACAGTGCCTGGTGTGACTGCCCGCTCCCACCCTGACATCTTTTATTTCCTCAGTTTCAGTGACCCTGCATGGCCCAGACCTCCTCGTCCCCCTGCAGCTGCTTCTGGAGCCTGCTCCCTAAATGCAGGTGTTTCCCAGCGCCCCCTCCCGGGGCCCTCTCCGCAGATCTCACCCTCTCCACGGCCTCAGTCGCCGTGTCTGTGTAGATCACTCCCACTCCCCCATCCCCAGCCGCGGTTCTCCTGGGTGACGGAACCGCACACCCAGCTGCCTCCTGGGCAGCTCCATCTGTATGTCTCACAGCACCTCAGGTTCCTCGTGCCTAAAACAGCACCGTCTCCCACCCTCCCCCAGAACCTCCTCCCTCCCCGTGTTCCCTACCTCAGGGACAGCACAGTCGAGTTGCTCAAGACAGAAACTGGGAGTCACCTTGACCTCCTGCTCTTCCTCACTTTTCCCCCTTCACCTCCACCCCAGCTTCATTCATGTACTGATCGCATCCTTCTTTCTTCTCCACTGTGCCTGCCTCCTTCTGCCTGTCTTTCCTGCGGCCTCTCCTGGCCTAGGCCACCACACCTGCCTCTCGTCTGGTTCACAGCTGCAAGCATTTACTCATAGGAGCCAGACTTGATCATGTCCCTTTCTGGAGTTTCCACTCAAAGCCCGAATGACAGAAGCACAAGGACTCGTCCCTTGGGGCCTCCCCTCCCCTACACGCTTCTCCTGCACTTGGTAGCCTCGTTGTCCTTTCATGAACCCAAATACACTGGGCTGCCCTTCGCACACACGGCCTCTCTGCCCCCATCCACTGGCCTAACTGCTACTTCCCCTTCTGGTCTGGCAGCTCTCCCTCTCTCTCTCTGCTTCATGGTCTCCTTCAGCGGGGCTGCTAGGGGATGGTCCTTGTCAAGATCTTAGAAAAGGGCAGGCACCCAGTGGGTGCTCAGTGACCATCTGCCCCTCACTTCCCAGCAGGGTGGTGGCCGGGGGGCTCTGCGCCTCTCTGCTCTCACCCAACACCCAGCACCCTTTGCTGCCATCCACTTACCTGTTTCCCTGTGGGCTGAGTGCTCCGTGAGAGCAGGGCTCATGGTTTTCCCTCAGCGTTTGCATTCGCTGAATAAGTACCTGCCTGAGCATACCCTGCCACAGAGCACTCACACGTGGGTCACTCAGACTGTCTGTCACCACCCTGGCAGCTGCACCAGGAGGCAGCACAGGAGCATGAAGTGGGCAGGAGCCACAAATCCACCACTTCTGGCTTCACTCTCCCTCCTGGGCCCCAGCAGATGCTTTCAGATGCTGCCCCTTTAGACACTGGGACAAAGGTGAATCAGCCAGACAGGACGTATGTGCAATGGGATCCAAACTAGGGAGGGCTGCCAAAGCAGGCACAGTTGTTAAAGGGCCCAGCCCCACCCACAGGGGGCCACTGCCCAGCACAGACCAACAGAGCTGAGGTACCTGCCCAGAAGTGGTCGAGCTGAGGGGGAGGAGAGGAGCTCGGGGAGACCAGGAGGATGGAGCGCCCAGAGGCACAGCTATGGGGGTGGCTTCAGAACAGCAAGTGTGCAGGGCAGGCTAGGCCCAGGGCCAAGGGCCTTAACTATCAGGAGCTGGGCTTATCCTGGAGGCAGGGCAGGTTTTAAGTGGGTGATGAGGGTGGGAGGTACAGCATCCAGAAGTTTCTGTACCCAGGCTAACTAGGCATGCATTGCCCACATGAGTTCCCTCAGCTTTGTGCCCACTGGCCAGCCTGGCAGTCCCAGTGGCACCTCTGTTCCCAGGCCAGGCTGGCACCAGTCAGTCCTCAGAGGGAGGCTTAGGGCGGGGCTGGCAGAGTGGGGCGTTTGGTGGCTCTGCAGCCCTAATAAGCTCTGGCCCCTCCTCTGTCACAG
Seq C2 exon
GCATCAGCCTCCTCATCCCCCCGGACGCCATACCCCGAGGAAAGATCTACGAGATCTACCTCACACTGCACAAGCCAGAAGACGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014897:ENSBTAT00000043831:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=20.6)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]