GgaINT0019310 @ galGal3
Intron Retention
Gene
ENSGALG00000018998 | UNC5A
Description
NA
Coordinates
chr13:10412094-10412537:-
Coord C1 exon
chr13:10412244-10412537
Coord A exon
chr13:10412182-10412243
Coord C2 exon
chr13:10412094-10412181
Length
62 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TCAGCATCCCCATCTCACAGGTG
3' ss Score
7.9
Exon sequences
Seq C1 exon
ACAACCTGCTCACCATCCAGCCCGACCTCAGCACCGCCACCATGACCTACCAGGGCTCGCTGTGCCCACGCCAGGACGGCCCTGCCAAGCTCCAGCTCCCCAACGGGCACCTGCTGAGCCCGCTGGGTGCCGGGCGGCACACTCTGCACCACAGCTCACCTGCTGCCGAGGGAGCCGACTTCGTGGCCCGGCTCTCCACCCAGAGCTATTTCCGCTCGCTGCCCCGTGGCACCGCCAACATGGCCTACGGCACCTTCAACTTCCTGGGGGGGCGGCTCATGATCCCCAACACAG
Seq A exon
GTACGGCGGGCGCTGGGGGACCGTGGGGCGCCAGCGATGGGCTCAGCATCCCCATCTCACAG
Seq C2 exon
GTGTCAGCTTGCTGATCCCTCCCGACGCAATCCCCCGAGGGAAGATCTACGAGGTGTACCTCACGCTGCACAAGCACGAGGAGGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998:ENSGALT00000029975:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.6=21.2)
A:
NA
C2:
PF0079115=ZU5=FE(28.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGGCACCTTCAACTTCC
R:
CTCACCTCCTCGTGCTTGTG
Band lengths:
139-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]