RnoINT0160597 @ rn6
Intron Retention
Gene
ENSRNOG00000059840 | Unc5a
Description
unc-5 netrin receptor A [Source:RGD Symbol;Acc:621755]
Coordinates
chr17:10156358-10159279:-
Coord C1 exon
chr17:10158977-10159279
Coord A exon
chr17:10156446-10158976
Coord C2 exon
chr17:10156358-10156445
Length
2531 bp
Sequences
Splice sites
5' ss Seq
CGGGTAGGA
5' ss Score
7.22
3' ss Seq
GACCCCCTCTGCCGTTACAGGGA
3' ss Score
8.68
Exon sequences
Seq C1 exon
ACAACCCCCACCTGCTCACCATCCAGCCAGACCTCAGCACCACCACTACCACCTACCAGGGCAGTCTATGTCCGAGGCAGGATGGACCCAGCCCCAAGTTCCAGCTCTCTAATGGTCACCTGCTCAGCCCACTGGGGAGTGGCCGCCATACGTTGCACCACAGCTCACCCACCTCTGAGGCTGAGGACTTCGTCTCCCGCCTCTCCACCCAAAACTACTTTCGTTCCCTGCCCCGCGGCACCAGCAACATGGCCTACGGGACCTTCAACTTCCTCGGGGGCCGGCTGATGATCCCTAATACGG
Seq A exon
GTAGGACCCTAGAACTCCCCAGAGAGCATGAGGGGTAAGACTAGTCTCAACATCTTTCCAGAGGCCAAAACAGCCCAGATATGCCGGAGTGCACCAGCCTTCTGTGGGGTGGCCCAGTCTGGCCAGTATAGAAAAGACTGCAGTTGGAGCTACAGTGAAGCCATGGATACGTGTCTCCTTGCTGCCTATGGACACGAAAGTCTTTGTTCATTTATCACATGGTCAGCCTTACATGTGATAGGCTCTGTGTTGGGCCCTAGTCTCAGGGGTAGAGCAACACCAGACCCCAGAGGCTCACAAAACAAGACAGCAGAGCACCCCTTAAAACCCCCACAGCATCCTGGATCTCACCCACCACTCCACAGAAGTACCTCAGACAGGGTCCCTGAGACCTCTTGTTAGAGGGTCCACTGACCCTCCTAAGGCTGTCTTTGGAGAAATCTCTGCAGCCTCTGACAAGGCTGACCATCCCACTCTGAAATTCTCCGTTCCCTCTCCTTAGGTGACCCCACGTATTCCTGATCTTGCCCCTCAACTGGCTGTTCTGGTATAGGCGTTCCTCAGGGATCCCCACCACCAGCCGCCGCCACCACCCTGTGCCATTTCTCTCTGAGTGATCTCACCTACTCCTCCATCCCAGCCCCCCAGTTCTCCCAGGCACTCGAACTCTACAGTCAGCTGCCTCTTGGGCAGCTCCATCTGGATGTCTCACAGCACCTCAGAGTCTTTGTGCCTAAAACAGAACCGTCTCCCACCCTTTCCACAGCCACCTCCTCCCTGGCTTTCCCCAGCTCACCGTTGTTAGCACAGTGTTGCTGCCTAAGCTAGAAACTGGCCTGGGGTCACCTTGGGCTCCTGCTCTTTCTATGCCCACCCTCGCCACTTGATGTCAGGCCTCCTCCTGCTCCTCTTCTTGCCCTGATGGGGCACCACACCCAGACTAGCACATCTCTTACCTCGTCCTGGGCTCCTACACATTTAATGAATGAATCTAGAGTTGATTATGCCCCTGCCCAACTCAATTCCTTCTAAGGGTGGTTTGCTCTCTACAAAGCTCTCTACAAAGCCCTCTACAAAGCTCTCTACACAGCTAATACAACCTACCCCCTGCTGGCTAGCTGCTGTGTGCTTTCCCCTCCTACACGCACTTCTGTATGTGACAGCTACTACAGATCCTTGGCACCTGAACACACGACACTGTCCCTGGCTCATAAGGGTCTCTCTACCTTTCCTCCTGGCTTGTGGTTGTTGCTGTCTGTGCCTCATACACCCCTCAGGACAGGGTATGAGAAGTCCTCACAGCTCAGTGAGGTGAGTTAGTCCCTGTCAGCTGTAACAAAAAGGCAGACAGACGGTGGGTACTCAGTGGCCCCTGCAGTGTGGGCAGCTGCCGGTTCTGCCCCATGTTCCTCTCTGTTGTTGCTGGACTGAGAGAGCTAGTGCCTTTTCCCCTCTCTGCTTTCCGAGTGCCCAGCGTGAGGACTCCAGTTTGAATACTCCCCCTCCAGCCAGAATTCACACCAAGATGTGTGTGGCTGTCACCAACACAAGGGGCATCAGGTTCTACGGTCAGCACAGGTTAGTGAGGGAAGCAAGAGTTGCAAGCACGTGGTCACTAGATTCCCTCTTCAGGGTTTCTGTGAAGCAGTCACACATCCCTCAATGGTAAGACACCAATAGGGAAACTCCCCAGAGCACACTTACACCACCCAGCAGCTCCAGTGTCAGGAGGACCATAATCCTATGGAACCGTCACTGTGTGTTTGTGGAGTATGGCGTCCTTACATAGTCCTTGAAGGGCCTGCGAGTCCAGCCCTGCATGTCCTGAAGCTACATCTGTCTGCTTTAGGGGAAAGTCCCTGATTGTCTCCCCTTTTCCTGTATGAGCTGAGAGGCCCTTCCTGGTATGGAGGCTTCCTGTCCTTAGAGCGGGGACCTCAATGCTGCTCCCCGTTATTTCTCAGCCCTGTCCTTGCTGTTTCCAACACAAAACTCCCCTTTCTCCACACACTGGGACCGCTCCTGGGGCAGAGGCATGTCAACAGACCAGGAAGACCTTGGAGCCGTAGATCTTGGCCCCTGAGGGCTGTTATAGACCCGTCCCTACCTGCAAGGATGGAGACAGTGACAGGAAGGGACCAGTTCCTAGAGAGGACAGGACTGATGGAGGAGGAACAAGGGGCCTGTTCCGCTGAATGTAGCACAGCTGGACAGAGGGACCACGGGGACGATGGTCATGGGCCTTACATGGCAGGCCTGGAAGATGGGGAAGGTTTTAAGCAGAAAATGCCCTGGTCCCAAATAACATAACAGGAGGTGGGGTGAGCATCCTTGGAGTCTTCTGCCCTACTTATGCTTCCGGCTGGGTTGCCTCAGAGTCGTGCCTATGTGGGTGGTGGGACGGCATGGCAGTCCTTGAAGCACCTCTGTCCCCAGACAAGGGTAACTAAAGAGGAAACTCGTGCGTCCAGCTAGTTCCTGGGGTGTCAGGTATGTGTAGCCGTAAGCCAGGACCCCCTCTGCCGTTACAG
Seq C2 exon
GGATCAGCCTCCTCATACCCCCGGATGCCATCCCCCGAGGAAAGATCTACGAGATCTACCTCACACTGCACAAGCCAGAAGACGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059840:ENSRNOT00000087397:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.265 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=20.6)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]