MmuINT0170581 @ mm10
Intron Retention
Gene
ENSMUSG00000025876 | Unc5a
Description
unc-5 netrin receptor A [Source:MGI Symbol;Acc:MGI:894682]
Coordinates
chr13:54999622-55002553:+
Coord C1 exon
chr13:54999622-54999924
Coord A exon
chr13:54999925-55002465
Coord C2 exon
chr13:55002466-55002553
Length
2541 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TGACCCCTCTGCTTTTACAGGAA
3' ss Score
11.24
Exon sequences
Seq C1 exon
ACAATCCCCATCTGCTCACCATCCAACCGGACCTCAGCACCACCACGACCACCTACCAGGGCAGCCTGTGTCCCCGGCAGGATGGACCCAGCCCCAAGTTCCAGCTCTCTAATGGTCACCTGCTCAGCCCACTGGGCAGTGGCCGCCATACGCTGCACCACAGCTCCCCCACCTCTGAGGCTGAGGACTTCGTCTCCCGCCTCTCCACCCAAAACTACTTTCGTTCTCTGCCCCGCGGTACCAGCAACATGGCCTATGGGACCTTCAACTTCCTCGGGGGCCGGCTGATGATCCCTAACACAG
Seq A exon
GTAGGCCCCTAGAACTCCCCAGAGAACATGAGAGGTAAGACTAGTCTTGTCATCTTTTCGTCCCAGAGTGCACCAGCCTCGTGCAGAGTGGCCCAGTCTGGCCAGTATAGGAAAGGATGCAGTTGGCGCTATAGCAAAGCTGTGGAAAGGGTCTCCTTGTTGCTTGTGGACACGAAAGGATTGTATGTTCATTTATCACACAGTCAGCCTTACATGTTGATAGGTGCTGCATCGGGCCCTAACACCAGACCCCAGAGGCTCACAAAACAAGACAGCAGAGCACCCCTTAGAACCTGCCCCCTCCCAGCGTCCTCCATCTCATCCACCACTCCACAGAAGTGCCTCAGACAGGGTCCCTGAGACCTCTTGTTAGAAGATCCACAGACCCTCCAAAGGCCATCTTTGGAGAAATCTCTGCAACCTCTGACAAGGCTGACCACCCCACTCTGACATTCTCTGTTCCCTCTCCTTAGGTGACCCCACATACTCCTGTTCTTGCCCATCCCTGGCTGTTCCGGTATAGGCGTTCCTCAGGGATACCCCTCCCCAACCCACCCCCACTTCCGCCCGTGCCATTTCTGAGTGATCTCACCTACTCCTCCATCCCAGCCCCCAGTTCTTGCAGAGCATTGGAACTCTGCATTCAGCTGCCTCTTGGACAGCTCCATCTGCCTGTCTCACAGCACCTCGGAGTCTTTGTGCCGAAAACAGAACCGTCTCCCACCCTTTCTCTCAGCTACCTCCTCCCTGGCTTTCCCCGGCTCACGGTTGGCACAGTGTCATTGCTTAAGCTAGAAACTGGCCTGGGGTCACCTTGGGCTCCTGCTCTTTCTATTCCCACCCCCTCGCTATAAGTCAGCTGTATCACATGATGTTGCATGCTCCCCCTTCCCAATAGCTCCTGTCTCCTCCTGCTCCTCATCCTGCCCTGGTGCGTCACCACACCCAGGCTAGCACCTCCCTTACCTCAACCGCGGCATCTACACATTTACTGAATGAATCTAGAGTTGATTATGCCCCCTCCCCACTCAATCCCTTCTAAGGTTCCCAGTTGCTCTCTACAGAGCCCCAGTGACAAGGCTAATGCAACCCACCCACTGCTGGCTAGCCGCTGTGTGCTTTTCCCTCCTATATGCAGTTCTGTATGTGACAGCCCCTACAGACCTTTGGCACCTGAACACATGACACTGTCCCTGGCTCATAAGTAATGGTCTTTCTACCTTTCCTCCTGGCTCATCTGTTGTTGCTGCCTGTGCCTCATACACCCCTCAGGACAGGGCATGAGAAATTCTCATAGCTCAGTGAAGTGAGCTGGTCCCTGTTAGCTGTAACAAAAAGGCAGACAGATGGTGGGTATTCCGTGGCCCCTGCAGTGTGCCCACCCCTGTGTCCCTCTCTGTTGTCTAGTTGCCTCTCTCCTTGCTGGACTGAGAAAGCTAGCGCCCTTTTTCCTCTTAGCTTTCTGAGTGGCCAGCATGAGTATTCAATCTTGAATACTACTCTCCAGCAGGCATTCACACCAGGAGGTGTGTGACTGCCCCCGACTCCAGGCAGCATCAGGTTCTACGGTCAGCACAGGTTAGTGAAGGAAGCAAAAGATTCGAGCACATGGGTTCGAGCTGTCTGTGAGACAGCTCGGTGGTAAGACCCATCACTCGGTGGTAAGACACGGACAGGTACACATCGTAGAGCACACTTAAACCACTCGACAGCTTCAGTGTCGGGAGGCTGTGTGACCCTATGGAACCATCACTGTGAGTTTGTAGAATATAAGTGTCCTTACATAGCCCTTGAACAGCCTGAGAGTCCAGCCCAGCAAACAGTGGAGCTATCTGCTGTTTTAGGGGCAAAGTCACAGAATGTCTCCCCTTTTCCTGCCCTCAGAGCAGGACCTCAATGCTGCTCTCCGTGATGTCTCAGCCCTGCCCTTGCTGTCTCCACTACAAAACTCCCCTTCCTCCACACACTGATACCACTCCTGGGGCAGAGGCGCATCAACAGACCAGGAGGACATTGGAGCCGTAGATCTTGGCCCTTGAGGGCTATTATAGACCTGCCCCCCATCCCCGCAAGGATGGAGACAATGACAGGAAGAGACCAGTTCTTAGAGGGGACAGGACTAAGGGGGGAGGAGCTTGAGCAAGACCAAAGGCCCCTGTTCTGGAACCGCTGAACGTAGCAAAGTTGGGCAGAGGGACCGACTGCTGGGATGACAGTCAAGAGCCTTCCATGGCAGGCCTGGAAGATGGGGAAGGTTTTAAGCAGAAAGTACCCTGGTCCCAAAGAACGGAACAGGATGTAGGACGCACTTCCTTGGTGTCTTCTTGCCCTACTTTAGCTTCTAGCTGGGTTGCCTCAGATGTTCTTGGAGTCTCCCTGACTCAGAGTCGTGCCTATGTGGGTGGTGGACAGTATGGCAGTCCTTGAAACACCTCTGTCCCCAGACAAGGGCGTCTGAAGAGGAAACTCGTGGGTCTGGCTAGTTCCTGGGTAGTTATTGGGTATCTGTAGCCACAAGCCGTGACCCCTCTGCTTTTACAG
Seq C2 exon
GAATCAGCCTCCTCATACCCCCGGACGCCATCCCCCGAGGAAAGATCTACGAGATCTACCTCACTCTGCACAAGCCAGAAGACGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025876:ENSMUST00000026994:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079115=ZU5=PU(20.4=20.6)
A:
NA
C2:
PF0079115=ZU5=FE(28.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types