BtaINT0160604 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35028273-35032680:+
Coord C1 exon
chr26:35028273-35028467
Coord A exon
chr26:35028468-35032546
Coord C2 exon
chr26:35032547-35032680
Length
4079 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CTGCTGCGGCCGGGACTCAGGTG
3' ss Score
3.47
Exon sequences
Seq C1 exon
AGGAGGGCACACAGAGACAAGCCTTGCTCTGAAATACCTTCTGCGCAAAGGATTCCCGGGGGGCAGAAATGCCTCTGTGCCCCAGGTCCTCATCATCATCACTGACGGGAGGTCCCAAGGGCATGTGGCCCTGCCCGCCAAACAGCTCAAGCAGAGGGGCATCACTGTATTCTCCGTGGGCATCCACTTCCCGAG
Seq A exon
GTAAGAGATTTGGTTGTGCTGGGTCAGCCCTCTGGGTCAGCCTGGAGGGCTTTACGGCCATGGGCAGAGAGGGGAGCTGGGAAAACCATCCTGGATCTTCGGGGACCTGTCTTTTCCTCACTTTGCTGTATTGTTGCTACCACACAGGGAACTCCAACTCTTTGGAAATCTGAGAGTTTGCGTTGTCTTTAGTCTGAACACTTGGTTTCAAGGGTCAGAAACTTGACTCCAAGGTATCTGGGCAGAAATGGAAATGCAGGGACTCATATAACTGCACCAGTGGGTCAGGGCTCTCTTGGGGTCAGCACGAGTTGAGGATTTCGCTGCCTTTTAGACTCTTTCTGTCCCCCATCCAGTTGTCTCTGCTCTTCTCTCAGCCCGGCTTCCTCAGGAAGCTGGGACTGTGGGTGCAGGCAGCACCCCAGGTCCCATCTTCCCAGGTCCACCGTGGAGACAGAAGGCTCATTTCTCCCGTTTCAAGTTGAATAATCCAAGAAAGTGTTCTGGTGAACCTGAGACCAGTCTGTGTCTGGCTCCCCTCTTCTCCAGCATGTTTCTCCAGATGCTGAAATCTGCCTTCCTGGTGAGAGGGGGGTGGTATATTCTCAGCCCTAGAAATGGAGATGACCTCTATGAAGGTCTAGTTGTGGGTATCAAGTGAAATGACTCTGGTCCTGGCACTGTGCCTGCACACAGACATCTCTACTAATTTTAGTACTGTCATTCCAGAACCAACTCCCTACCCCAGGACACCACAGTCCACGGATGTTCAAGTCCTTTATTTAGCCCTCCCATATCTGTGGATCACAAACATAGCTCAGGAGCCACAGTGAGCTGAATCTGTGGGTGTGGAACCTATGGATCTGGAAGGGCTACTGTACTTTTCTTATTCTCTCAATAAACATAGGTTGTCTTCCTCATGCCAGACACTATTCTAGGTTCTCAGGATACAGAGACAATAATATTATACAAAGTCCTTGCCTTCATGGAACTCCTTCTAGGAAAGGAACTAGATAACAAACAAGTGAGTGAATAAATAAGTAATTTCAGGTGGACATAAAATGCAGAGAAGAAAAATAAAGTAGGTAAGAGGTTACAAAATGATGGGAGTAGAGAAGATAGCTATTTTTGGGGGGGTAGGTCGTGCCATGCAGCTATTGGGATTTTAGTTTCCCAACCAGGGATTGAACCAGCAGTGAGAGTGCTGAGTCCTAACACTGGACTGTAAGGCAATTCCCAAGAGGATAGCTATTTTAGATAAGGGGAGTCTGGTAAGGCTCCCTCAAGGAGTTGATTTTTGAGCAGAAGCTTAAGTGAGGAACAAGCCTTCCAAGTAACAAAAGAGAGCAGGCAAGGCAGGCAGATGGCAAGTGCAAAGGCCCTGAGGCAGCAGCTAGCTGAGTGTCTTACAGAAACAGCAAGACAGCCAGAGAGCAGCTGGAGACCAACCGGCAAGGGGCGAATTACAAGAAATAAGGTGGAAGAGGTGGGCAGGAATCTGGGCTGGAGACTTTGTGGGTTATTGTGGAGACTGAAGGTTGTAATGAGTAGTGTGGGAAGTCTGTGGAGGGTTTTGAGCAGGAGAATTGCATGAACTGGCTTACATTTTTAGGAGATCACAGGGACTGCCAAGAGGAGAATAGACTGATGGGACCGAGAGAGGCGATGATAGGGGCAGTGGGGAATCTAGGAGATGGTGGAGCAGCTCACGTGCAGTTTAATGGTGGTTTGTCATAGGGCAGCAGCTGTAAGCCGCCGAGGAATGGCTGGATCTAGGCTGTGCTTGGAAGGTGGAGCAGTGGAGTGACTGGTGTGTTAGACGTGGGTGTATGAGAGAAGAATAGAAGATTTTGGCTTGAGCCCCAGCATGAATGACATGAGAAAGACTGGGAAAGGAAATTGAATGCTGTTCTAGACAGGGCAGGTCTGATTCATATTGGCCATCTCAGTAGAGAGGCTGAGCAGGGAGTTGGATGGAAGAGTCTGGCACATAGGAGAAGGGACAGGCATCGAGACGGAGACTGAAGATAGTGTTTAAAGCCTAAATAAGATCACCCGAGTGTCGGGTGAGAGGACCTCCGAGGACCAGCAAGTGCAGGTCAGAAAGGAAGGTTGGAGACTGAGGTTGCGGGCACCATGGGGCTGTCCTGATTGTGCACCGTGTTGCTGTCGTTGTAAGTTGGTACTAACGCAAGCTGCCTTATGGCTGGCTCTTTCTGTGTTCCCAGATATAAGGAACATAAACCCCTTGAGAGAGGAGAAGGGTGTTGCTTTATGGCTCCCTGCCCACCCTCCTGCCCAACCGTGTCTTACGAATAATAGTTGCCCAAGGCCTATCATTGAGGATGGAACTCCCCACAAGGTGGAAACACTGGCCCATTCTGGGGCTTTCTTCTCCAGCTGCTAGCTGGAGGAGCGCTTCTCAAACTATATGTGGTGAAGGTCCAGTTTTTTTCCCTAATGGATTATGCCCTGATGCTTAAAAAAAATTACAATTATCAGAAAAATGAAATAAAGACAAAGACAAAATAGAAGCTCAAATTCTTATTAATTGACCCAACAGACATAAAAATGGCTCTGTCAAGTTGCCATACAGTTAGTTTATAAATGCTTGGTATCTATGCTTATGAGATTCTGAATCAGGGTGAGAAGTTTAGGGACCTGTACTGGGCCACAGACCATACTTTGAGCATTCCTGGTGTAGAGAAATTAAGAAGCCAGTTGCTCAGGAGACAGGGTATCACTCAGATTTGAGAACCCGAGTTTTGCAGACACAGGAAGCCTCCGAGGAAGCCTGCTGGGCTCGCAGGCCCACCTAACCCCTTCTCCCACTCCTAGTAGAAGGTTGGAGCACCGTTGACCAGTGGTTCTCCAGGTGTGTTCCTTGGACCAGCAGCATCAGCATCATTTAGAGCTTGTTAGAAATCCACGCACTTGGGCCGCACCTCATTGAATCCAAAACTCTGGGGCAAGGAGCCTCAGTCTCTGCTTTCTCTGGTCCTCGGTGATTCTGATACCACTAAAGTCTGAGAACCACTGTAGTGAGATTAAAGACTGATGCCGCTCAAACTCTTCCCTCCCCGCCTGCCTTTAGTGTATTTTAAACCCATTCTCTGAGGATTCTCAGCTCTGGCTGAGCATCTGGATTACCCAGGGAGCTTTTAAGGTCTCTTTGGGAGCTGGGAGAGCTAAGGGTGGAGCCTAGCAGAGCTGCCCAGTCAAAGCTACTGTAAATCTAGAACTAAGAAGCCCCTCCTTCATGCCAGGCGCTGTCCTAGGTACTGGATAAAATGGCTGGTTTCTGTGGTTTCAGAGGAGAATCAGAGTTTTACATGAAGTGATTTAGAGATCCATGAATGTTTTGCTGTATTGCCAAGCCTTGGTCTATTTTGATGAACTTTTTGATGGGTAAGATTCTAAATGGGTTACTGACTGCCTATTCTTCTTAAAGACAGAGTTTTTCCAACATCCTTTAACCCTTCTTCATGCCCTAGGGTCATTGTCCCACCCATCATTTCTATTCTGGGCACTGACAGTGCCCTCTGGTTGTTGAACTATGCCAGTTCCCATCTCTACATGGCCTTGCATTGCTGGCCTCTGAGTTCTTATGGCCATGGTTTATAATCATCAGGATTATTATTATTATTTTTTCTATTACTAGTTGTTCCTGTGTGTGCTTCTCTTGGCATCACCTAGAACCACAAACCACTTTCCTTCATTTCCTTTCTGGTTAAATTTTTCTCATCAGCTAAAGTTATAAAACCGGATGACTAGATCTGTTAGGACTGAGTCTCAAATAAGAGCTGGCAGTTCAGTGGGAGGCTCTCCTCTGAGGAAACTGGTGGGTTGCTGGAGCATGCACACATTACTACCCACAGCTCAGCATCCTGTCTTTCTGTGGTTCACGTCTAGACCTTCCCTGCATCCTAGATGGATGAGGTTGCAGCTAGGGGGCTCCTGCCTTGGTGGCTGGTGGTGCTGTCCACACAGAGCCCAGGGTCTAGGAGATGGGTGGGCAGGAGGTGGGTGAGCGTGGGGCGACGAGCCATTGTGACTTCTCTGCTGCGGCCGGGACTCAG
Seq C2 exon
GTGGGAGGAGCTGCACTCGCTGGCCAGCGAGCCAAGGGAACAGCACGTGCTGATGGCCGAGGAGGTGGATGACGCCACCAACGGCCTCTTCAGCACCCTCAGCGGCTCCTCGATCTGCACCACCGCCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860:ENSBTAT00000009011:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.109
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(37.8=100)
A:
NA
C2:
PF0009223=VWA=PD(19.2=71.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]