RnoINT0164005 @ rn6
Intron Retention
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277715695-277719841:+
Coord C1 exon
chr1:277715695-277715886
Coord A exon
chr1:277715887-277719707
Coord C2 exon
chr1:277719708-277719841
Length
3821 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTCTTGACGTTTCCCCCCAGGTG
3' ss Score
11.01
Exon sequences
Seq C1 exon
AGGTGGGCGCACAGAGACAGGCCTAGCCCTGAAACACCTGCTCAGAGGGCTCCCCGGAGGAAGAAATGGCTCTGTGCCCCAGATCCTCATCATCATCACAGACGGCAAGTCCCAGGGGCACGTGGCTCTGCCGGCTAAGCAGCTGAAAGAAAGGGGTATCGTTGTGTTTGCAGTAGGGGTCCGTTTTCCCAG
Seq A exon
GTAAGTAAATGCCTCAGCCATTCCGAGTCAGCTTCAGGCAGTGGGGCTAACGTGACTGGAAGGGCCTGACAGAGCCAGTTTCATGCTACCCTCTGCCTTATCTGAAGCTTTGGTTGAAAGCACCAGAAATCAACTCATACTCACTAGACAAAAATAGAAATCGATGGTGTCGACTCATTTCATCACGTGTGTGAGCCGCCCGCCCCTCGGAGGCAGGAGCCATGGAATTCAGTACTTACTGCTCAGCTCCTTTCTGTCCTACCACAGATCTCTCACACTCCCTGGGCTGTCCTCTCAGCCTGGTTTTCTGAGTCATGGACAGCACCCCAGCCACACCATCCATCTCTATACTGGGAGGCGGGTGGGTCTCCAGCTTCTGCCAGCCCAATTCTGATCAGCCTAAGTCACATGTACACCCAGCCAACAATGGCGGGGGCACCTTCGAGATCCACCATCCTCCCCCAGCCACCCTCAGCTGGGGGTTGAGCAAATCTGCCTTCCTAGAAGAGAGGTTCACATGCCCCAAATGCTCTCCGCCTTAAAAACAGATTTGGCTTCTAGACCTTGAGTCTCTATTTGTAACTATAGGTGAAATGACTCTGGGTGGCCATCAAGCCCCCATTTAGGACTTTCTTTAGTTTTATCATTCTTTTCTCTCTGTTAGAATGGGTTTCCTCCTCACACTGACACTAGTCTTGGACTAGACCTTACAGATGCCCATCTATCCCATGGGAAAGACTAGATAGTAAATGAATGGATGCCCACGTAGGAGGTGTGGTTTCAGGTGGAAATAGAACCAAAGAAGAAGGCAAAGCAAGGGCTGATGGGAGCAGGGAGACCGGAACTGTTAGAAGGGAGGCTGCTGAGGGAGGTCCTCTGGATTTTTTAAGAAAAAACATGGCAGGCAGCAGCAAAGACTCTAAGGCTGTGAGTAGCTCGCTGTAGATAGGAGAAGGGCCCAAACAAGCAAGGTGCTGAATCACAGGAAATATGGTAGATGGAGTGGCCACGGGGAGGCCAACTCTGCTGTGAGTCCCAGGGAGACGGCTCCCCGGATGAGAGTGCTTGCTGCGCAAGTGTGAGGGCCTGGGCTTAGATCCTCAGAATCCATGTTTGACCTGTACCTGTAACCCCAGAGCTGTAGGGACAGTGACAGGAGGATCTGTAGGAGCACAAGCCATCAGCCTAGCAACAGCTCAGCAAGCTCTGTCTGGGAGAGCAAAATGGAGGGATAGGGCCAGACATCTAACATCTTCCTGTGGCCTCAGAACAGGCATCTGTGCGCGCGCGCGCACACACACACAACACACACACACAGCACATCACACACATGTATACCACACATTTACACTTCATACAAACACATACATACACATTCTTATACCTCACGGGTGTAGGAACACACATATACACATACACACACACACATGCACACATACATACATCACCCACCCACATACCACACAAACACACCACACCCACACCCACATATATCCACATGCTTATACCTCACGTGTGTAGGCACACACACATATATACACACACACACAAACACATACATACACCACACACACACAACATACACATACATGGCACACCACACACACTACACACACACAGAGATGTATATATATACACATACATACTTATACCTCATATGTGTAGGCACACACACATGCACACATGCACACATACTTACACCACCCACCCACACAGCACACAAACACACCACACACACACACACACACACACACACACACATTCTGTTTTTAAACTGTGGTGTGGATATTGCTGAAGGCTTTGGCATTTATTCTAAATACAATGGAAAGCTCTTGGGGGTTTCAGCAGAAATGGTGTCTTCAGGAGGTCACACTGACTGAGGCACTAGGGAGCAAGCTTTAGAACAACTCAGACCAGAGACAGTTAGGTTTAAAGCACTAAGCTGCTGGTGCATGCTGGGCACACTGGCTGGGGTAGGGGTGGGGGCTGGGACTCACTGGGGTGTGGTGGAGCATACTGGGGCACTGCTGGTCATGAGGGGTGTGGTGGAGGTCGAGCAGGGTAATGGCTGTGGAGTCACATGTGACTGGGAGTGGAGAAGGAACGACCTTGACCTGAACCCTAGAGTGAATGGTGGTGCTGTTTCCTAACATGGCAGAGACACACACACACATTCTGTTTTTAAACTGTGGTGTGGATATTGCTGAAGGCTTTGGCATTTATTCTAAATACAATGGAAAGCTCTTGGGGGTTTCAGCAGAAATGGTGTCTTCAGGAGGTCACACTGACTGAGGCACTAGGGAGCAAGCTTTAGAACAACTCAGACCAGAGACAGTTAGGTTTAAAGCACTAAGCTGCTGGTGCATGCTGGGCACACTGGCTGGGGTAGGGGTGGGGGCTGGGACTCACTGGGGTGTGGTGGAGCATACTGGGGCACTGCTGGTCATGAGGGGTGTGGTGGAGGTCGAGCAGGGTAATGGCTGTGGAGTCACATGTGACTGGGAGTGGAGAAGGAACGACCTTGACCTGAACCCTAGAGTGAATGGTGGTGCTGTTTCCTAACATGGCAGAGAGACTAAAGAGAGTGAGACCAGTATGATGTCTCAAAGTGTGCTCATTCCTCTCTGCCCCCCTTTCCTGATGACTGAGCCTCTTTGTGATGTTTCTGCACTCTAGTTAGCACCTGAATTCCTTGGGCAGCTTTTGAGAAAGCCTGTTGCTGGGCCGGAAGAGTGGAAGGGGACTGGCAGGCCACGTCTGAGAAGCCCCCTTCTGTGTGCCAAGGGATAACTGGGTACTGGGTGAAAGTTTAGCCTACCTGGAATCGAGTAAGATGGAGAGTTAAATGCTAGAGAGTTTGGGGCTCGATGACCTTCTCTTTCTATCTGGTGTCTTCTCTTCCCATCACAGACTGCCTTGTCTTCATTCATTTTTAAACTATTCCTCCTTATTAGGGTTTGGGCACACACGCTTGCAGCAGTGCACTATGGAGGTCAGAGGACAACTTGTGGGAGTCTGTTCTTCCGTTCTACCATGTGGGTCCCAGGAATCAAACTCCCGTCATCAGGCTTGACCCAGCACCCTGACCTGCTGAGCCTCTCACTGGCTCTTAAAACAAACAAAAAATGAAATTTAACATTTATTTGCCTTATCATGCAAAGATTTCTCAGTGCCATTTCTTCTTCATGACTTAGGGTCATCCACATACCATTTTGTCCTGGGCACTGATGGTGATGCCCTCTGAGCACTGGAGAATTCTGGCTGTTTCTCCTCCCCAGCCTCATGGCTCTGGTTGCCTTGGGGCTCCTTCCTATCTTAGAGATCTGCTGTCACTGGCTGTCCTTCCTTGCTTCCTCTTTCTTATCTCAAACAACTTTCTCTCTCTTTTGCTTTCTGGTTGTTTCTAACAATTAATCTTTAACTTAAAAAGCAAATAGAAAGGACTAGTCAACAGAAGAAAACGTTAGAAAGTTATATATGTCTACATTTGTGTGTGCAACTATGTAACGAATTCCTGAAGTTACAGAGTTGGTTCCTTATCAGCTGTGCCTGTGAGTTAGAAGAGTCGGTTGAACTCCTTAATACTTTGTCTTGCCCAGGAGCCTCTGGGTTTGAAGATGAGCAGTTTAGCACAGGGTGGACTGTAGCTGAGCTTCCTTGAGAACTTCCTGAGTTTACTTCTCACTCTCACCTGGACCAATGAGGTCGCTATGAAGTGATAGCTGGGTCCCTGGAACAGAGCTGTTGGAATGGCACTCTGGCCCAGGAGCTAGGTAGGCAGGCAGAGGAGAGAGGGCAAGGCTCTTGACGTTTCCCCCCAG
Seq C2 exon
GTGGGATGAGCTGCTGACGCTGGCCAGCGAGCCGAAGGAGCAGCATGTGCTGTTGGCCGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCTTGCTCTGCACCACTGCTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581:ENSRNOT00000051834:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(37.4=100)
A:
NA
C2:
PF0009223=VWA=PD(19.3=71.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]