MmuINT0174345 @ mm9
Intron Retention
Gene
ENSMUSG00000025082 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:MGI Symbol;Acc:MGI:2684334]
Coordinates
chr19:56972364-56976151:+
Coord C1 exon
chr19:56972364-56972555
Coord A exon
chr19:56972556-56976017
Coord C2 exon
chr19:56976018-56976151
Length
3462 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCAGAATTTCCCCCCCACAGGTG
3' ss Score
9.29
Exon sequences
Seq C1 exon
AGGTGGGCGCACCGAGACGGGCCTAGCCCTGAAACGCCTGAGCAGAGGGTTCCCCGGAGGCAGAAATGGCTCTGTGCCCCAGATTCTTATCATCGTCACGGATGGCAAGTCCCAGGGGCCCGTGGCTCTCCCGGCTAAGCAGCTGAGAGAAAGGGGCATCGTCGTGTTTGCCGTAGGAGTCCGTTTTCCCAG
Seq A exon
GTAAGTAAATGCCTCAGTCAGCTTCAGGCAGTGGGGCCAGTGTGCCTGCAAGAGCCTGCCAGAGCCTTCCGGGCTGCAGCAAAGACTGGGGATCTGGGAAGACTGGCTGGTCTTTATGTGTCTCCCCGCAACGCCCATCCCCCTTGTTTTGCTCTTCTGGCTCTAGTGCATAGCACATTCCCAACCTTCCAAAGCATTGAGGTTTCATGCTGCCCTCTGCTTTTTACCTGAACCTTCTGTTGTAAGCATCAGAAAGTAAACTCACTTGACACAAATATAAACCAATGGAATCAACTCATTTCACCATGTGTGTGAGCTTCCCACCCCTCGGGGGCAGGAGCCATGGAATTCAGTACTGCTCAGCTCTGCTCTGCCCACCACGCGTCTCTCAAGCTCTCTCAGCTTTCTCAGTCTGGTCTTCGGAGAAAGAAGGAGTGGGGGTCATGAGCAACATTCCAGCCCACAGCATCACATCTCCACGCTGGGAGGCGGGTGGGTCTCCAGCTTCTGCTAGCCCAGTCATGTGTACACCCCAGCTGACAGTGGCCGGGAGTCTACGTGAGATCCACCACCCTCCTCCAGCCACCCTCAACCAGGTGTTGAGCAAATCTGTCTTCCTAGAAGAGAAGGTCACACGCCCCCAATGCTCTCGGCCTTAAAAAACAGGTATGGTTCCTAGTCCTTGGGTCTCTAGTTGTAAGTTTAGGTGACATGACTCTGGGCTGGCCATCAAGCTTCTGTTTAGGAATTTCTTTCGTCTTATTCTTCTTTTCTGTCTATTAGAATAGGTTTCCTCCTCGTGCTGACACTAGGCTAGTCTTGGAATAGACTAGACTATCCCGTCTATCTCATGGGAAAGAGTAGATAGTAAACGAATGGATGCCTATGTAGGAAATGTGATTTCAGGTGCAAATAGAAGGCCAAGCGGGTGAGGGCTGATTGCACAGGGAGAGCAGCTTTGGTCGAAGCGGGGCTGCTAAGGCTGCTCCGAGGAGTTGTTTATTGTTTGATTTTTTAAGAACAAACATGACAGGTAGTAGCAAAGCCCCAAGGCAGTAAGTAGCTTGCTGTGGGTAGGAGCAGGGACCAAGCACATAGGAAATATGGTAGATGGAGCAGCTGGGGGCAGAGGTGGGGTGGGGGGAAGCCATTCTGTTGTGGGTGGCAGGGAGATGGTTCCCTGGTGAGAGTGCTTGCTGGGTAAGTGTGAGGACCTGAGCTTAGATTCTAGCACCCAAGGTTAAAAAAACAAAAACAACAAAAAAAAAACAACAGAGAAGTGACTAACCCCAGAGCTATAGGAACAGTGACAGGAAGATCTGTGGGATTTTCTAGCTGTCAGCCTAACAACAGCTCAGCAAGCTCAGTGAGCTGCTGTCTGAGAGCGCACGGTGGAGAAGGGATAGGACCAAACATCTAACATCTTCCTGTGGCTTCAGAGCACATATCTGCATGTGCACACGTTCGTGCACACACACACACACACACACACACACACACATACATAGCACATTACACACTCACACTACACACATACACACAAACGTAGACATACACATATGTACACATACCATACACACATATAGGCACACATACACACCACACCACATATGCACACATGTACCACACACACACTCAGATTCTTATTTAAAACCCTGTTGTGGATATTGTTGAAGGCTTTGGCATTTACTGTGAGTACCGTGAAAAGCTCTGGGGACAGGGGGTGGTGTTCGACAGAAATGGCATTTTCATGTGATCACACTGGCTGAGGCCCTAGGGAGGAGGCTTTAGAACAACTCAGACCAGAGACAGTTTTTGTTGTTGTTGTTGTTGTTGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAATTCACTTTGTAGACCAGGCTGGCCTCGAACTGAGAAATCTGCTTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACCGTGCAGCTCAGACCAGAGACAGTTATGTTCAAAGCACTAAGCTGCTGGTGTATGCTGGGCACACTGGTAGGGGCTGGGGGGTCACTGGGGCACACTGGGGTGTGCTGGGGCATACTGGGGCATGGCTGGACCTGAGCTGTGTGGTAAAAGTCAAGAAGGGTAATGGCTGTAGAGTCACATGTGGACTGGGAGTGAAGACTGGAGCGTCCTGGCCTGAACCCTAGAGTGAATGGTGATGTCATTTTTCAACATGGCAGAGAATTAAAAAAAAAAAAAAAAAAGAACAGGAAGCCATCTGAAAGTATGCTCTTTCCATCTCCAGCCCCCTTTCCTGCTGGTTGAGCCTCTTTGTGACGCTTCTCCATTCTAGTCAGCACCTAAGTTTCTTGGGCAGCTTTTGAGAAAGTCTGCTGCTGGGCCAAAACAGTGGAGGGGGGAACCAGCGGGCCACATGTGAGAAGCCCCCTCTGTGTGCCAAGGGATAACTGGGAAGTGGGTGAAAGCTTAGCCTGCATGGAGTCGAATAAGATGAAGAGTTAAACAAACGCTAGTCAAGTTTGCAGCGTGATGACCTTCTCTTCCTGTCTGGCTGAGTTTCAACACTTCTTTCCTTCACATCACAGACTCCCTCATTTTCATTAATTTATAAACTATTTCTCTGCACCAGGGTCTGGGCACACATGCTTGCCGAGGTACACTTGAGGTCAGGACAACTGTGGGAGTCTATCCTTCCTCTCTACCATGCGGGTCCCAGGGATCAAAGTCAGGTCATCAGGCTGGGCATGGCACCCTGACCTGCTGAGCCTCTCACTGGCTCTTAAGACAAATGAAAAATGAAATTAGCATTTATTTGCTTTGTCTTATTAAACAAAGATCTCTTCTTCGTGACTTAGGGTCATCCACTTACCATTTTGTCCTGGGCACCGGTGATAATGCCTTCTGGGCACTGAAGGATTCTATTTCCCTTCCACGGCAGCAGAGTGCTGGCCTTGGCTGCCTTGGGTCTCTTTCCTATCTTGGAGTTCTGCTGTCACTGGCCATCCTTGCTTGCTCTCTTTCTCACTTTAAACAACTTTCTCTCATTTGCTTTCTGATGGATTTTAACAATTAATATTTAACTTAAAAAAAACAAATAGAAAGGATTAGACAACAAATGAAAAGTTACATATGTATAAGTTTGTGTGTGCAACTATGTAACAAATTCCGAAGTCCCTGAGTTGTGCTCCTTCTCAGCTGTGACTTTTAATTAGAAGAGAGGTTGAATTCCTTAACACTTTGTCTGCCGATGAGCAGGTGGGTTTGAGGACAAGGCGTTTAGCACAGGGTAGACTGTAGCTGAACTTCCTGAGTTTACTTCTCAGTGTCACCTAGACAGATGAGGTTGCTATGAAGTGACAGCTGGCTCAGTGGGATGGCACTGTGGCCCAGAAGCTAGGTAGGCAGGAAGAGGAGGGAGGGCATGGTACTAGCTGTCAGAATTTCCCCCCCACAG
Seq C2 exon
GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025082-Vwa2:NM_172840:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(37.9=100)
A:
NA
C2:
PF0009223=VWA=PD(18.3=67.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: