GgaINT0044696 @ galGal3
Intron Retention
Gene
ENSGALG00000008980 | VWA2
Description
NA
Coordinates
chr6:29203417-29203870:+
Coord C1 exon
chr6:29203417-29203611
Coord A exon
chr6:29203612-29203739
Coord C2 exon
chr6:29203740-29203870
Length
128 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
CTGAACCCCTTGTTCTGCAGGTG
3' ss Score
9.44
Exon sequences
Seq C1 exon
AGGTGGCAGCACAGAAACTGGTCGGGCTCTGAAATACATTCTCCATAAGGGATTCCCTGGTGGCAGGAACTTGACTGTCCCCAAGATCCTGATCATCATTTCGGATGGAAAGTCCCAGGGCAGTACTGCAGTGCCTGCCATGCAGGTGAAGGAGAGAGGGACCACAGTTTTTGCAGTGGGAATCAAGTTTCCAAG
Seq A exon
GTAGGAAACCATCCACGTATTTGGAAAGGAGTTCCCCAGATGCCAAGTGTGGGGTTTGTTTTGCTCTCAGTTCTTTGGGGGTGATGTAGGGCCTGGTTATTCCAGCGGCTGAACCCCTTGTTCTGCAG
Seq C2 exon
GTGGGAGGAGCTGCATGCTGTGGCCAGTGAGCCCACCGAGCAGCACGTGCTCTTTGCCGGCGATGCCAGCGATGCAGCCAACGGTCTGTACAGTGCCCTGAGCAGCTCCATCTGCAGCGTCACCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980:ENSGALT00000033088:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(37.8=100)
A:
NA
C2:
PF0009223=VWA=PD(19.2=73.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCTGGTGGCAGGAACTT
R:
GGGCACTGTACAGACCGTTG
Band lengths:
242-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]