BtaINT0160605 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006860 | VWA2
Description
von Willebrand factor A domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24709]
Coordinates
chr26:35032547-35033425:+
Coord C1 exon
chr26:35032547-35032680
Coord A exon
chr26:35032681-35033292
Coord C2 exon
chr26:35033293-35033425
Length
612 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GGCATGCATGGTGGATACAGACT
3' ss Score
-1.12
Exon sequences
Seq C1 exon
GTGGGAGGAGCTGCACTCGCTGGCCAGCGAGCCAAGGGAACAGCACGTGCTGATGGCCGAGGAGGTGGATGACGCCACCAACGGCCTCTTCAGCACCCTCAGCGGCTCCTCGATCTGCACCACCGCCTCTCCAG
Seq A exon
GTGAGTAAGGGCCTCCCAGCTGGGAAGGAGTGGCCTTGCCCATATGGAAGTGGGATGCGAGGGTGGGGAGGGTTCCCCAAGGCCAGAAGTCAGGACACAGGAGGCTCCCTAGGGAAGTAGGGGAAGAGGGATAGGACCTAGCATCTTCAGCCCTGGGACACTCAGCTTTGTCCAGCCTCCCTGTGTCAGGCCCTGTGGGGGTTTTGGCTGGGAATCCTGAGATTGTCTTTGAGGGATCGAGAGGCTTGGGGCTTGGGACCCCGATGTGAGGGGGTGGGCCCTGAGCCTGTCTACTGCTTGGGAGGAGGAAGGAGCCAGCTCCCCACGCTGTCAGCACAGGGAGGCTTCATCTGGGGGTGAGATCCCTGTATGCATAGTCAGCTTTGTCAGGGTCTCCGGGAGCTGGAGTGACATATGTAGTGTGAAAGATACACGTGTGCACAGGATGGGAGAGCTGTGAGGGGCGGGGCCTGTGCAGAGGAGATGCTCGGAGACTGGCTGGCCCTCCGCTGTGTGCTCTGCTGAGAGGGAGTGAGGGCAGGGGTTAGTGGGACCACAGGGAATGAGGCTTAACTTTGTCTTCCCTGTCTTGGGCATGCATGGTGGATACAG
Seq C2 exon
ACTGCAAGGTCCACCCTCACCCCTGTGAGCGCAAGACTCTGGAGACGATCAGGGAACTTGCTGGCCTCGCCCCGTGCTGGAGAGGATCTCGGGGCACTGATGCTGTGCTGGCTGCCCTCTGTCCCTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006860:ENSBTAT00000009011:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(19.2=71.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAGGAGCTGCACTC
R:
GGAGAAGGGACAGAGGGCAG
Band lengths:
265-877
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]