MmuINT0174346 @ mm10
Intron Retention
Gene
ENSMUSG00000025082 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:MGI Symbol;Acc:MGI:2684334]
Coordinates
chr19:56901528-56902368:+
Coord C1 exon
chr19:56901528-56901661
Coord A exon
chr19:56901662-56902235
Coord C2 exon
chr19:56902236-56902368
Length
574 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GTGTGTGTCTTCTGACACAGACT
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTGGGACGAGCTGCTCACGCTGGCCAGTGAGCCGAAGGACCGGCATGTGCTGTTGGCTGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCGCACTCTGCACCACTGCTGATCCAG
Seq A exon
GTAGGACTCACCAGCCTGCAAGGGAATAGCCTTGAACCTTACAGACTAAAACATGGGCTGAACAGGGCTCTTGAGGCCAGAGCCTCCCAGGAAGGGTGGATAGAAAAACAGGCAGCCCCTGTCCTGGGTGCTCTGTTCTGTTTCCTTATGGCTGTCTTTGTGGATTTCCCAACTGGAGTTCTGAGCTTATGCCTGTAGGATAAGGGGCCTGGGATTTAAGGTTAGACTTGGTAGGGCTCTTTTCCCTGCTGAGGAGACGAACCAAGTCCACATCTCTCTTTGGCTGCCTGGAGGAACTCAGGGATGCTTTGGGCTTAGGATACCTATCTAGGTCCACCCCAGACCTACAGTGACATTCAGACAGAAAGTGCCTGTGTGTGCTGTGAGTGGAGCCTGGGACAGAGGACATCCAGACACTGCTTCATATCAGTGCTCTGCCCTGAGAGGCTACAGAGTGAACAGCAAGGGGTAGAGTCGGACTCCATGGCAGCCACTCTGGGGAATGGGGGCTGAGGCAAACAACATCCCTTGTCTTATGGTGTGTGTGTGTGTGTGTGTGTGTCTTCTGACACAG
Seq C2 exon
ACTGCAGGGTGGAACCTCATCCCTGTGAGCGGAGGACGCTGGAGACCGTCAGGGAGCTCGCTGGCAATGCCTTGTGCTGGAGAGGATCAAGGCAAGCAGACACTGTGCTGGCTCTGCCCTGTCCCTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025082:ENSMUST00000026068:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(18.3=67.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAGCTGCTCACGCTG
R:
TGTAGAAGGGACAGGGCAGAG
Band lengths:
262-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types