RnoINT0164006 @ rn6
Intron Retention
Gene
ENSRNOG00000025581 | Vwa2
Description
von Willebrand factor A domain containing 2 [Source:RGD Symbol;Acc:1562000]
Coordinates
chr1:277719708-277720578:+
Coord C1 exon
chr1:277719708-277719841
Coord A exon
chr1:277719842-277720445
Coord C2 exon
chr1:277720446-277720578
Length
604 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
GTGTGTGTTTTCTAACACAGACT
3' ss Score
7.9
Exon sequences
Seq C1 exon
GTGGGATGAGCTGCTGACGCTGGCCAGCGAGCCGAAGGAGCAGCATGTGCTGTTGGCCGAGCAAGTGGAGGATGCCACCAATGGCCTCCTCAGCACCCTCAGCAGCTCCTTGCTCTGCACCACTGCTGATCCAG
Seq A exon
GTAGGACTGGCCAGCCTACAGGGGAGTGGCCTTGAACCTGACAATCTAGGGCATGGGCTAAACAGGGCTCCTGAGGCAAGAGCCTCCCAGGAAGGGTGGGTAAGAGAGACAGGCAGCCTTGACTTGGGTACTCTGTTCTGTTTCCTTCCTCTGAAGTGTTTCCCAGCTGGAGTTCTGAACTTATGTCTGTAGGAAAAGGCCTGGGGTTTCAAGTTAGACTTGGTAGGGCTCTTTTCCCTGCTGAGGAGATGAACCAAGACCACATTTTTCCTTGGCTGCGTGGAGGAACTCAGGGAGGCTTTGGGCTTAGGACTCCTGTCTCGGTCCACCCCAGACCTACAGTGACACTCAGATAGAAAGTGAGTGCCTGCGTGTGCTGTGAGTGAACCCTGGATCAGAGGAAATCCAGACATGGCTTCACACCAGTGCCCTACCCTGAGAGAGGCCAGAGTCTACAGCTAGGGGTAGAGTAGGTCCCCATGGCAGCCACGCTGGGGAATGAGGGCTGAGGCAAAGAGCATCCCTTGTCTTATGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCTAACACAG
Seq C2 exon
ACTGCAGGGTGGAAGCTTACCCGTGTGAGCGGAGAACGCTGGAGACCATGAGAGAGCTCGCCAGCAATGCCTTGTGCTGGAGAGGATCAAGGCAGGCGGACACTGTGCTGGCTGTGCCCTGTCCCTTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025581:ENSRNOT00000051834:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(19.3=71.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCTGCTGACGCTGG
R:
TGTAGAAGGGACAGGGCACAG
Band lengths:
262-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]