DreINT0174589 @ danRer10
Intron Retention
Gene
ENSDARG00000075441 | vwa2
Description
von Willebrand factor A domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-100302-1]
Coordinates
chr12:30206867-30207215:-
Coord C1 exon
chr12:30207082-30207215
Coord A exon
chr12:30206997-30207081
Coord C2 exon
chr12:30206867-30206996
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTGTGCTGTGAATCCTGCAGGCT
3' ss Score
8.04
Exon sequences
Seq C1 exon
ATGGGATGAGCTCCGTGAATTGGCGAGCGGTCCATCGGACTCTCACGTGTTTTTCGCAGAGCACTTCAGTGATGCTGTGAATGGATTATTCACCAGCCTTACTACCTCCTCTGTCTGCATGTCCATTCCTTCAG
Seq A exon
GTAAAACACTCACCAGTGACTCAGTCAACAGTCTGTTTGTGTTCATGAACATTAAGTGAAGTTTCCTGTGCTGTGAATCCTGCAG
Seq C2 exon
GCTGTAAGGTGGAGTCATACCCATGTGTGCAGAAAACCCTGGAGACGGTCAAACAGCTTCAGGGAAACTTTGTCTGCTGGAAAGGGTCCAAGAGATACTCGGCATACACGTCCCTGTGCCCTCATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075441:ENSDART00000152985:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(19.2=71.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGAGCTCCGTGAATTGG
R:
TGACCGTCTCCAGGGTTTTCT
Band lengths:
183-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]