GgaINT0044697 @ galGal3
Intron Retention
Gene
ENSGALG00000008980 | VWA2
Description
NA
Coordinates
chr6:29203740-29204794:+
Coord C1 exon
chr6:29203740-29203870
Coord A exon
chr6:29203871-29204661
Coord C2 exon
chr6:29204662-29204794
Length
791 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TGGTTTGCTCTCTGCTACAGGCT
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTGGGAGGAGCTGCATGCTGTGGCCAGTGAGCCCACCGAGCAGCACGTGCTCTTTGCCGGCGATGCCAGCGATGCAGCCAACGGTCTGTACAGTGCCCTGAGCAGCTCCATCTGCAGCGTCACCACACCAG
Seq A exon
GTAACCCCAGTCCTGTCCCCCCTTCACACCTCTGCTTTGAACTTTGTCTGTGTCACTGAGTGAGGAAAGATGAGGTGGTGTCAGAAATGGTGCCTATAGCCAGGGTGTCTGAGGTCCGTGTCTTGGAGCAATCACATTGAGGAGCCGTGTGGTCTACAGCGCTTTGAGATAACCTGTTTCTGGTGTCCAAGCTTGTCAGATGCCTCTCCAGATAGCTGTAGGTTGCAGGATCCTAAGTCTTTCTGTGGCATTCACCTCAGAAGATAGGGATGCTGGTCCTTGCTTGTGTCATGGGTAACAGAGGGATTGTTTCTTCTAGAGACTGTCATTTCACAGATCATTTTTGATAACGTTTCATGGTACGTAGAGCGTGGATCCCCTTCTTGCGTAGGCACACAGCTGTGCTAAATCTTCTGTTAAACTTGGCTGTGTGGTAAGTCAGGAAGGGCCTCACAAGAGATGGAAGAGACAGCCATGTGGGGACTAGAGTGGTCCATAGGTAAATCAAATACATGAGTAATGCAGGTACCACAAGGGGCTGAAAAGTGCTTCTGAATTCAGCAGTGCCAGATGTGTGGCAGAGCAAAGGAGGCAGAAGAGTGTGTACCTCAAGAGCTGGAATATACTGAGATTGACCACAGAGAATTTCTATTCTGGGGTCTCACAGAGGCCTACTATACTTTTGACAAGTAGGTGAAGAAAGCTAATTTGCTTCAAAGTGGTGCTCCATGCCCATGCAGGTTCTGTACTTTTAGGCAGATGACCCCAATTTGGTTTGCTCTCTGCTACAG
Seq C2 exon
GCTGCAAAGTTGAATCCTTCCCTTGTGAACGCAGAACTCTGGAGACTGCGAAGGAGCTGGCTGGAAGCTATGTCTGCTGGAAAGGCTCAAAGCAGCAGAATGTAATGCATGCTTCACTCTGCCCTTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008980:ENSGALT00000033088:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009223=VWA=PD(19.2=73.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAGGAGCTGCATGC
R:
TGTAAAAAGGGCAGAGTGAAGCA
Band lengths:
263-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]