BtaINT0163607 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004361 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]
Coordinates
chr16:56696960-56699664:+
Coord C1 exon
chr16:56696960-56697888
Coord A exon
chr16:56697889-56699564
Coord C2 exon
chr16:56699565-56699664
Length
1676 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTTTGCTCCTCTTCCAACAGATT
3' ss Score
11.4
Exon sequences
Seq C1 exon
ACGACCATGGAGAAAAGTGGGAACATACAACTGGAGATCCCTGACTTCAGCAACTCTGTCCTGAGCCATCTGAACCAGCTGCGCATGCAGGGCCGTCTCTGTGACATCGTGGTCAACGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTGGTCCTGGCTGCCAGCTCCCCCTACTTCCGGGATCATATGTCCTTGAATGAGATGAGTACTGTCTCCATATCAGTCATCAAGAACCCTACTGTTTTTGAACAGCTCCTTTCTTTCTGTTACACGGGGCGGATCTGCCTGCAACTGGCGGATATCATCAGCTACCTGACCGCTGCCAGTTTTCTGCAGATGCAGCACATTATAGACAAATGTACCCAGATCCTGGAGGGCATTCATTTCAAAATTAACGTGGCTGAGGTTGAAGCCGAATTAAGTCAAACGAGGACCAAGCATGCAGAGGGACCTCCGGAGTCTCACAGAGTTACACCAAATCTAAACCGCTCCCTCAGCCCCCGACATAATACCCTCAAGGGAAACCGGCGAGGTCAGGTGAGTGCTGTCCTGGATATCCGGGAGCTCAGTCCTCCCGAGGAGTCCACCAGCCCGCAGATTATTGAACAGAGTTCTGATGTAGAGAGCCGGGAACCCATTCTTCGAATCAACCGAGCAGGACAGTGGTACGTGGAGACAGGGGTAGCAGACCGAGGAGCCCGGAGTGACGATGAAGTTAGAGTCCTGGGAGCAGTACACATCAAAACGGAAAATCTAGAGGAGTGGCTTGGGCCTGAGAATCAGCCTTCCGGAGAAGATGGGAGTAGTGCAGAGGAAGTCACGGCCATGGTGATTGACACCACAGGCCATGGTTCTGTAGGACAGGAAAATTATGCTTTAGGATCTTCAGGAGCCAAGGTGGCTAGGCCAACAAGCAGTGAGATTGACAG
Seq A exon
GTAAGTTGTTTTGTTTGCCCATCTAGTGGCTTACTGTGTAGACATAGCTAAAGCAGGCCCTCTGTGTGACACAAAGAGCATCTTCTTCCTTACTTGATGTTCTTCGTCAAAATAAGTTTATGTTGGGGAAACTGAAAGTGTGCCAAAAGACTTGCATTCTAATTTTTTTAAAGCAGGAAGCTCCTACTCCTGAAGTGTTCACAGTGTTGTGAGAACTATGGTAAAGTTAGACACTTCATGAATCAGAATAGCATCTGCAGTCACACTAGGATCAGTAATTGCCAGGGCCTCTTCAGAATTGAGGAAGAGAGCTGATCATCAGCTGTGAATCTGACAGCATTGCCCTTCCTTGGTATGGTCTCACACAGGTAGGTGGCCTCTGGGAGTCTCACTTTCCTTTGTAGCAGTTTACCTTTCTTTGCCTCCCCTGCTACCAAATTTGAGGAAGTATGGTACTAGCAGTGATGGTTCTTTTTAGTGTAATCACAGTAATTCCAAAGAAAAGCTTTTTGAGTGTTTTTCATTCCTTTTTTTCACTTGTCATTTGACTATATCTTTTCCATTTCTTTCATTGATGACAGCTGCTACCATAAACCTGAGAGTTTCTTTTTTTCACCAGTGCTACTATGCGCTATGCCTTACTTTTCTCTTTGCAATACATTGTGATTGTTTCTTTTGGGGGGAAATAACAATAATTTTAATCTAAGTTGAAAGAAAGTCTTAAAGAGAAAAGTATTACCAACTGAGATCGGTAATATTCTTTTCCTTTCTTAAAAGTTTAAAATTGAGTGAATGAACAGTGGTAACTAAAGAAGCTATTCCTTTGGTTTGCATCTGTTCTTGAGAGATAAATGTGTCATAAATTCGGAGAGGATATACTGTATCTACTTCAGTTGGTCTTGGTTTGAGTATTTTCCTTCTTCTGTCTTTCATAGTTAAAATATTCTTGAGCCTAATACTTACTGTCACCTGTATGAGCATTGTTGTCCCTCTTGTTAGAACTGTGTCAGGAACTAAATAGCTTTAAAGGCAAAGGTTTTTGATCTCCACAGTCTGTATCTGAAATATATAGCAAATTATCATGGGACTTGGGGAAAGGATTAACCAAAAACCTAAAATTTACATAGAAGAAACAAAAGACCTAGTTTTAATTTATTCCTTTTTGGTTTTCTAGTACTTAACATAAGGATAGAAGCTTATATTTAGCCTTAGCTTCACCAGATCATATGGTCTATCAGCTGTGTCATTTTTTATTTCTTAAAAATTTAGTAGGGCAAACTTGTCTTATTTCATGCCAACGTGCTAAGTCGCTTCAGTCGTGTCCAACTGTGTGTGACCCCATGGACTGTAGTCAGGCTCCTCTGTCAGTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATGCAATCCTGCAGGGGTCTTCCTGACCTAGGGATCAAACCTGTGTATCTTATGTGTCCTGCATTGGCAAGCAGGTTCTTTACCACTGGCGCCACCTGAGAAGCCTTCTTATTGCATATGATTCTATATTGACTCCATGGAAGGACTTCTTAGAAATCTGTTGTTCGATTTGTTCCCCCTTCCTAGACTATAAAGGAGGCAGACGTCAGCAGTTTTTAAGCTCCTCGACACTACTTTCCTGTTAGTCCCCTTTTTGCTCCTCTTCCAACAG
Seq C2 exon
ATTTAGCCCCTCCGGCAGTGTTGTTCCCTTGACGGAGAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAACCTAAGCAACCCACTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004361:ENSBTAT00000038473:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAATCAACCGAGCAGGAC
R:
TTCTGGCTCTGTGTCTCTCCG
Band lengths:
342-2018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development