GgaINT0039965 @ galGal3
Intron Retention
Gene
ENSGALG00000004597 | ZBTB37
Description
NA
Coordinates
chr8:7721399-7723855:-
Coord C1 exon
chr8:7722927-7723855
Coord A exon
chr8:7721499-7722926
Coord C2 exon
chr8:7721399-7721498
Length
1428 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GCTCTTCCCCCACCCCACAGATT
3' ss Score
10.33
Exon sequences
Seq C1 exon
ACAGCCATGGAGAAGAGTGGGAACATTCAGCTGGAGATTCCTGACTTCAGTAACTCTGTCCTGAGCCACCTGAATCAGCTGCGCATGCAGGGTCGCCTGTGTGACATCGTGGTCAACGTGCAGGGGCAAGCTTTCCGCGCTCACAAGGTGGTGCTGGCTGCCAGCTCGCCCTACTTCCGCGACCACATGTCCTTGAATGAAATGAGCACGGTTTCCATTTCTGTCATCAAGAACCCATCTGTTTTTGAGCAGCTCCTTTCCTTTTGCTACACCGGTCGAATATGTCTGCAGCTGGCTGACATCATAAGTTACCTAACGGCCGCCAGTTTCTTGCAGATGCAGCACATCATAGACAAATGCACGCAGATTCTCGAGGGGATTCATTTCAAAATCAACGTGGCGGAGGTGGAAGCAGAATTGAGCCAGACCAGGACGAAACATCAGGAGAGACCCCCGGAGTCTCACCGGGTGACGCCAAATCTGAACCGTTCCCTGAGCCCCCGTCACAACACCCTGAAAGGGAGCCGCCTGGGCCAGGTTAGCACAGTGCTGGACATACGGGAGCTCAGCCCACCAGCAGAGTCCACCAGCCCTCAGATAATCGAGCAGAGCTCGGACGTGGAAAGCAGGGAACCCATCCTGCGGATTAACAGAGCGGGACAGTGGTATGTTGAGACGGGAATGGGAGACCGCGGGGGACGGAACGATGACGACGTCCGGGTGCTGGGAGGAGTGCGCATTAAAACGGAGAACCTGGAGGAGTGGCTGGGGACAGAGAACCAGCCGTCAGGAGAAGATGGCAGCAGTGCTGAGGAGGTCACCGCTATGGTCATCGACACCACGGGCCATGGATCAATGAGCCAAGAGACTTATGCGTTAGGGTCCTCCGGAGCCAAAGTGGCCAGGCCGACCAGCAGTGAGATTGACAG
Seq A exon
GTAAGTTTTCTTTAGCTTATTTACTGACCTTGGCTGTACGAGGAGATTGAACAAGATTTTCACTTGTCTGGATTGTTCTGTTTTGAATATCTTCCCCTAATATTTCATGTGGCCATCTTAAGCGTAAGCGCTGAAGGAATTTTTCTACTGTGTTAGAGAGTGTTTGGCTTTTGGTTTTGATTATAATGTTTTGGCTGGATCACGATCAGACCACGTTCTCCAGGTGCAGGCTAACTTAGGAACTTGAGTTTTAGCACTTAGAGATGTATAGATTGGAATCTCTATGTCTCAGTGTTCCAACTGTGGTGGGATTTTTGTCTAAAAGCGACATTGCAGTTCAGCCTCAGCAGATACCACACTCAGCACTGGAATCAATGAGGTTGTATGCAGTATGTTACACAAAGTACCACTGTAACGATGCCTCTTGGCCTGGGAATTGGTGGGTGCTCTGCTTTAGGGACAAGCTGGCCACCAGCTGTAGGTCAAGAGGAAATTTTCTTCCTGGTGGCCCAAGATAGCAGTGGGTCATGGATTTACCTCTTCTGAAGCTGTCAAGGTGGGGAGTCTTTTAGCCTCCACTGTTGTTTTGATTATATGAAAGAGCAAAAAGCTGTTATTGGTAATAGGTAGTGAAATACCCTGTGTTTTGTTTCTCCGTCCATCTGCTTCCCCTGAGCTCCAGCATTTGTTTTCTTGTCCTTAGCTCAGACCAAACAATGGAGCTGATAAAGGGTGGATTGTTTGTACCTATGAGGTTTTGGATTTATGGCAGATTTCCCTTCACATCTGCCTCTGTTCTCGTCCATCTCAATCCCTCTGGTCCCACAGGGGAACAGCTACCCAGAAACAGTGGATGTTCCATCACTTTAATAAAGTCTGTGGGAATGGTCTTGAGCTGGCCTGTGGGACAGGAAGACTTTCCTAGCTTCTTACCTCTTTTCCATGGGTCACCTAGCCCTGAACATCTCCTTTTGCACTGCACTCCATATCTACTGTTTCCTACCTGGAATGCACCTCATCACTGCTGGGATGTGTCTCGGTGTCTCAGTGTCATGAGGGGGAGGAGGATGAGGGTGGTACGTGAGGGATGCCCTTGGAGAAATGGTTTCTTCTCCCGTAGAGTTCCTGAGTTCACCGGGCCCATATCAATTTATTTGCTTGCAGTAGCGACCGAAAAGCTCTCTATTACTGAACTGGAAGCCAAATGACTTAGTTTTATTTTTCAGATGTTAAGACTGAAACTACAGACCACTATGACTTGGTTTTTCCTTTATACTTGCGCTGTTCAGCGTTTCACTTCCTGTGTGTTAGCCGGTGAGGATGAAGTGATGTTATACAGGTGCCTCTATTGCTCACCCGTTGTTCTATGCACCACAGTGACCTGATGCCCATCAAAAACTCCATTTACGCTCTTCCCCCACCCCACAG
Seq C2 exon
ATTTAGCCCTTCTGGCAGCATGGTTGCTGTGACTGAGCGGTACAGATCAAAAAGCGAGTCTCCCGGGAGGATGGATGAGCCCAAGCAGCCCAGTTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004597:ENSGALT00000007316:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.853
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGGACAGTGGTATGTTG
R:
CCGGGAGACTCGCTTTTTGAT
Band lengths:
343-1771
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]