HsaINT0184606 @ hg19
Intron Retention
Gene
ENSG00000185278 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:28365]
Coordinates
chr1:173839335-173842704:+
Coord C1 exon
chr1:173839335-173840286
Coord A exon
chr1:173840287-173842604
Coord C2 exon
chr1:173842605-173842704
Length
2318 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTATGTTCCTCTTCCAACAGATT
3' ss Score
10.48
Exon sequences
Seq C1 exon
CAGGGTTGAATGCACCCTCAGGCACGACCATGGAGAAAGGTGGGAACATACAATTGGAGATTCCTGACTTCAGCAACTCTGTCCTGAGCCATCTAAACCAGTTGCGCATGCAGGGCCGTCTCTGTGATATTGTGGTCAATGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTGGTGCTGGCTGCCAGCTCCCCCTATTTCCGGGATCACATGTCCTTGAATGAGATGAGTACAGTCTCCATTTCAGTCATCAAGAACCCTACTGTTTTTGAACAGCTCCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTGGCAGATATCATCAGCTACCTAACAGCTGCCAGTTTTCTGCAAATGCAGCATATTATAGACAAATGTACACAGATCCTGGAGGGCATTCATTTCAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCACAGGGTTACACCAAATCTCAACCGCTCCCTTAGCCCACGACATAATACCCCAAAGGGAAACCGGCGAGGTCAGGTTAGTGCTGTGCTGGATATCAGAGAGCTAAGTCCTCCTGAGGAGTCCACCAGCCCTCAGATCATTGAACCAAGTTCTGATGTAGAGAGCCGGGAGCCCATTCTTCGGATCAACCGAGCAGGACAGTGGTATGTGGAGACAGGAGTGGCGGACCGTGGGGGTCGGAGTGATGATGAAGTTAGAGTTCTTGGAGCAGTACACATCAAAACTGAAAATCTGGAGGAGTGGCTTGGGCCTGAGAATCAGCCTTCTGGAGAAGATGGGAGTAGTGCAGAGGAAGTAACAGCCATGGTGATTGATACCACAGGCCATGGTTCTGTAGGACAGGAAAATTATACTTTAGGGTCTTCAGGAGCCAAGGTGGCTCGGCCAACAAGCAGTGAAGTTGACAG
Seq A exon
GTAGGTTTGGTTTGGTTTGGTTTTCCCATGTAATGGCTATTGTGTAGACATCACTAAAGTGTCCTCTGTAGTACAGAGAGCATTTTCCTTACCTGATTTTCTTGGTCAAAATAAGTTGATGATGGGGAAACTGGAGGTGTGCCAAAAGACTTGCATTCTTATTTTTTTAAACCAGGAAGCTCCATTCCTGAAGTATTCACAATGTTGTGAGAACTGTGGTAAAGTTAGACACTTCCGTGAATCAGAATAGCATCTGCAGCCACACTAGGATAGGATCAGTAATTGCCAGGGCTTCCTCGGGATTCGAGGCAGGGAGCCGATCATCAGCTGGGAACCTAGCAGCATTGCCCTTCCTTGGTGTGTTATCACACAGGTAGGTGGCCTCCAGGAGTCTCACTTTCCTTTGTAGCACTGCTTGCTTTTCTTTGCCCCCAACTACCAAATTAGAGGAAGTATGGTACCAGCAGTAATTGTTCTTTTCAAATTAGTAAAATAGTAATTCTGAAGAAAAGCGTTATGGATATTTTTCATCTCTTTTTTCCCTTGTCACGTGATGGTATCTTCCCTGTTTTCTTTCATGGATGACTGCTGCTACCACAGGCCTGACAATCTCCCTTTTTTTCACCAGTGCTGCTATGCCCCATGCCTCACTTTTCTCTTTTAATACATTGTATTTATTAGACATTTCTTTTTGGTGGAAATACCATGGGTTTCAGTCAATTGAGAGAAAGTCTCAATTGAAAGAAATATTACTAATTTAGATTGGTAATATTTGTTCTTTTTCCCTCTTAAAAATAAATTTAAATTGACTATATGAGCAAAGAAAACTAAAAAACTATTACTTTGGTCTTGAGAAACAAATGTATCACAGAGATTCAGTTAGTGTATACTGTATCCACTTCAGGTGGTCTTTTTATTTTATTTTATTTATTTTATTTGAGACGGAGTCTCGCTGTGTCGTCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACACCATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTCCCTGCCCCCATGCTCAGCTAATTTTTGTGTGTGTGTTTTTAGTAGAGATGGGGTTTTACCATGCTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGACCCACCTGCCTCAGCCTCCCAGAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCCGGCCTTATTTTATTTTATTTTTGAGATGAAGTCTCACTCTGTTGCCCAGGTTAGAGTGCAGTGGTGCAATCTTGGCTCACTGCAGCCTCTACCTCTTGGGTTCAGGCGTTTCTCCTGCCACTGTGCCTGGCTTCAGGTGATCTTGATTTGAGTATTGTCTTCCTGTGTCCTTATTAAAATAATCTTGAGCATAGAACTTGTCCTCCTATGTTAGAACTGTATCAGAAGTTCTCGGGTGATGGGTGCACCAAAATCTCACAAATCACCAAAGAACTTACTTATGTAACCAGATACCACCTGTTCCATGATAACTTATGGAAATAAAATTTTAAAAAAAACTATCAGAAGTAATATCAGGGCCAGGTGTGGTGGCTCACACCTGTGATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACTTGAGGCCAGGACTTTGAGACCAGCCTGGCCAACATGGTGAATCCCATCTCTACTAAAAATACAAAAATTAGCTGAGCGTGGTGGCACGCACCTGTAGTCTCAGCTACTGGGCCAGCTGAGGCAGGAGAATCGCTTGAACCCAGGAAGTGGAGGTTGCAGTTAGCTGGGATCACGCCACTGTACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAGTAATATCAATTTCAATGCAAAGATTTTTTAATCTCCATGATCTATATCAATAGTCTAAAATACAGATTATTATGGGACCTTGGGGAAGAAACAGCCAAAAACCTGGTAATTACGTAGAAGAAACAAAATTATAGGCCCCGTTTTAATTTATTCTTTTATGGTCTCCCAGTATTTATATAAGGAAGAAAGCTTATATTTAGCTTTAGCTTCACCAGCTCATATGTTCTATCTGTTATGTCATTTTGTGTTTATTAAATTTACTAGGGCTAACCTATTATTTCAAATCAGATTATGTATTAACTCCACAAAACTATTCCTCAGTTATTTGTTGCTTGGTTTGTTCCCCCTTCCTCAGCCATAGAATAAAGAGGGGCGACATCACCATTTTTCAGGTTCTTTGATGCTGCTTTTGTATTAGTCCCCTTTATGTTCCTCTTCCAACAG
Seq C2 exon
ATTTAGCCCCTCCGGCAGTGTTGTTCCCTTGACAGAGAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAGCCTAAGCAACCCAGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185278-ZBTB37:NM_001122770:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=NA C2=0.900
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=34.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)