DreINT0177252 @ danRer10
Intron Retention
Gene
ENSDARG00000042689 | zbtb37
Description
zinc finger and BTB domain containing 37 [Source:ZFIN;Acc:ZDB-GENE-050208-621]
Coordinates
chr22:16006621-16007867:-
Coord C1 exon
chr22:16006924-16007867
Coord A exon
chr22:16006721-16006923
Coord C2 exon
chr22:16006621-16006720
Length
203 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
GTACTTGTTTTTTTCCTCAGGTT
3' ss Score
10.71
Exon sequences
Seq C1 exon
ATGGAACGAGCAGGAAGCATCCAACTTGATATTCCGGACTTCAGCAACTCCGTCCTGTCGCACTTGAACCAGTTGCGAATACAGGGTCGTCTATGTGACATTGTTGTCAATGTTCAGGGCCACAGTTTTCGTGCCCACAAGGTGGTCCTTGCCGCCAGCTCCCCCTACTTCAGGGACCACATGTCACTGAGTGAGATGAGCACCGTGTCCATATCAGTCATCCGGAACCCAACCGTATTCGAGCAGCTCCTTTCGTTCTGCTACACAGGACGATTATGCTTGCAACTTGCCGATATCATCAGTTACCTGACGGCTGCCAGCTTCCTCCAAATGCAGCATATTATTGATCGTTGCACACAGATTTTGGAAGGCATCCACTTTAAAATCAGCCTATCAGATGTGGAAGAGGAGCTCGGGAATGGAGCTCATAGAACCACCAACCAAACCATTGAGTCGGGACGAGGTGGGACGACACTAAGTGGGTCCCGCTCCTTGAGTCCCAGACTCACAAGCTCCCGGTTGATTGGCAACACTGGGGTGATCAGCATCCGCGATGTGAGGGAAGTTCGAGAGATTAGTCCCCCTGGGGAGTCCATGAGCCCTCAAATAGTGGAGCACAGTGGCATTGGCTCCGAGGAGGTAGGATCTGGAAAAGAACCCATTCTTCGAATTAACCGAGCCGGGCAATGGTATGTTGAAACAGGACCTGAGGCAGAGAGAGGAGGAGAGGAGAACGTGCGGATGGTTGATGGGTTTCGGATTAAGACAGAAAGGATGGATGAGTGGATGGGGGCAGAGACCCAGGCTTCAGCGGAGGAAGGCAGTGGGGCAGAGGAGGGGCCGACAGTAATGATTGACACCTCAGGACGTAGCACACTAGTGCAGGAAGGAGGAAGAGGTGGGAAAAGTTCCCAGCCGTCCAGTAGCTTCAGTGAAACAGAGAG
Seq A exon
GTGTGTATGGCATCTAAAGGAAGTTCACGTTCAATTTTAAAAGTTTTTTTTTTTGTATAAGAATCTTATCGATGTAGATACAAACTTTCTTTTATGTTAAGGAACGTCAAGACACAGTACTTAAATGTATTTCACTTAGCTCAATAACACTTTTTCTGTTTTGTTTGGTAAAATTGTGAACCTGTACTTGTTTTTTTCCTCAG
Seq C2 exon
GTTTAGTCCAACAGGTAGTGTGGTGGTCATGGCTGATCGCCAGAGAGCCAAGAGTGAGTCTCCAGGAAGAGTTGACGATCAGAGACATCCCACCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042689:ENSDART00000062629:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGAGGCAGAGAGAGGAG
R:
TCCTGGAGACTCACTCTTGGC
Band lengths:
308-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]