MmuINT0177681 @ mm10
Intron Retention
Gene
ENSMUSG00000043467 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:MGI Symbol;Acc:MGI:2444467]
Coordinates
chr1:161029642-161032764:-
Coord C1 exon
chr1:161031805-161032764
Coord A exon
chr1:161029742-161031804
Coord C2 exon
chr1:161029642-161029741
Length
2063 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTATGCTCCTTTTCCAACAGATT
3' ss Score
10.67
Exon sequences
Seq C1 exon
CAGGGTTGAATGTCTGCCTGTGCTTTCAGGCATGACCATGGAGAAAAGTGGGAACATACAATTGGAGATCCCCGACTTCAGCAACTCTGTTCTGAGCCATCTCAACCAGCTACGAATGCAAGGCCGGCTCTGTGATATTGTGGTCAATGTGCAAGGACAAGCTTTTCGGGCTCACAAAGTAGTACTGGCTGCCAGCTCCCCTTATTTCCGGGATCACATGTCCTTGAATGAAATGAGTACTGTGTCCATTTCTGTCATCAAGAACCCTACTGTTTTTGAGCAACTTCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTAGCAGATATCATCAGCTACCTAACAGCTGCTAGTTTTCTGCAGATGCAGCATATTATAGACAAATGTACGCAGATCCTAGAGGGCATTCACTTCAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCATAGGGCTACACCAAATCTAAACCGCTCACTTAGTCCACGGCATAATGCCTCAAAGGGAAACTGGAGAGGGCAGGTCAGTGCCGTGCTGGATATCCGAGAGCTCAGTCCCCCGGAGGAGCCCACCAGTCCTCAGATAATTGAACAGAGTTCTGATGCAGAAGGCCGGGAGCCCATTCTTCGAATCAACAGAGCAGGACAGTGGTATGTGGAAACAGGACTAGCAGACCAGGGGGCCCGGAGTGGTGACGAAGTTAGGGTTCTTGGAGCAGTGCACATCAAAACTGAAAATCTAGAAGAGTGGCTTGGGCCAGAGAATCAGCCTTCTGGAGAAGATGGGAGTAGTGCAGAGGAAGTCACAGCCATGGTGATTGACACCACAGGCCATGGTTCTATAGGACAGGAAAGTTATACTTTAGGGTCTTCAGGAGCCAAGGTAGCTCGGCCAACCAGCAGTGAAGTTGACAG
Seq A exon
GTAAGTTTTGTTTCTCCTTTTAAAGCTATTGTACAGACATCATTAAATAACCTTTCTGTGTTACAGAGGGCATCTTTTTTTACCTGATATTCTTATTCAGCTTACTTTGGGAGACTGGAAGTATGTCAGAAGACTTGCATTTTCAGCACAGGAGGCTCCTGGATCTGAAATATTGACGATGTTATGAGAACTGTGGTAAACTGTGGTAAACTGTGGTAAAATTAGCCACTTCAGTGAATCAGAATAGCATCGGCAGCCACTCTAGGATCAGTAATTGCCAGGGCTCTCTGCACTAGGCAGGGAGCTGATTGTCAGGGGTCTGGTAACATTGCTGTTTCTCACACAGGTAGGTAACCTTGCGGAGTCTGACTTGCCTTATAGCACTGTGTATTTCTCTTTGCCCTTACCGACAGAGACAATTTGGTACCATCAATAATTTTCAAATTAGAGTAATTACACTACAGTAATTCTAGAGAAAAGCTTTTGAATGTTTTCCAAGTGTCACCTGGTAATGTTTCCTTTGAAGCAGCTACTACCCCAGGCCTGTTTCTTCCTAACATACTGAGTCTGTTAGAAGGGTTCCTTTTAGTGGGAATAGCACTGGCTTTCATCGAGTCAATTGAAAGAAAAATGTTACTAGTTTAGATTGGTAATATTTTGAGTTCTTTCTTTCTTTTTTATTTATTTATTTATTTGTTGAAACGATTTCTGTAGCTCAGGCTGTTCTAGAACTCAGGGCAGTCCTCCTGCCTCAGCCTCCTGAGTACTGGGATTACTGGCATGGGTTGCCATATTTGTACTTTGTTGTTGTTTGTGGGGGTTGTTTTTGTTTTTCAAGGCAAAGTTTCTTTGTATGGCCTGGCCTGGAACTCAACTCAGAGATCTAATTGCTTCTGCCTCCTGAGTGCTAGGATTAAATGAGTTTGCCACCACCGCCCAGCTCTTGTTTTTTTGTTTGTTTGTTTTGGTTTTCTTTGTTTTGTTTTTTGAGGCAGGTAATTCAAGATGATCTATAGCTTACTTTTGGCCTAGGCTAACCTCAAAACTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGACCTCGAACTCAGAAATCCGGCCTGCCTCTGCCTCCCAAATGCTGGGATTAAAGGCGTTCGCCACCACGCCCTGCTAAGCATTCTTCCTGCCTCAGGCTACCGAGCACTAAGAAGATAGGCTGGCTTATTCTTTTCCCTGCTTAAAATAGATTGAAATGGGTAAAGGCACTTAGAATCAAGCCTGACCATCTGAGGTCACCCCTGGCTGGCACATGGTAGAAGGAAAGAATGGACTCTAGTAAGTTATCTGTCCTCTACACACATGCCTCTCATACATAAGTTAAAAAAATGAACTTGGGAGTAACTAAAGCCAACTAACTCGGTTCTTTAGTTTATAGCTGATAATGTAGACATTTAGGATTTTTTTAGCCATTTAGGTGGTGTTCATTTGAATATTTTCCACCACGTGACCTTGATAGACTAAATATTCTTCAGCACAGAATATATTCATCCCCAGTGTGGGTAGCTGTTGTTCTCCTGCAATAGAACTGTATTAGGATGTATGTCTTAAATACAAAAAGAGCATTAATTTATATGAACTATGAACTTACCGTAAGAGAAGGAACAGCTCAAACCCCAGTAGTCACATAAAAGAACCAGAATTTCCAGGCATCATGGAACATGCTTGGAATCTTAGCACTTGGGAGGTTGAACCAGAAGGACTGCTATGAGTTGATGCACATGTAGCCGTGGAGCCTACCCAGTGTAGTGAGTGCCAGACCACCCAAGGCTTCCTAGCAAGACCATAGCTCATAAACGCAAAACACAACTACGGACTTTTCATCTTCTCTGTGGTCTACTTGCTTTGTCACTTTGAAAATATTTCTGCTTGATTTAGTTCCATTCCTCAGCGATAAGATAGAGTAGAAACAGCATTCAAGTTCTTTGACACTACTTGTCTATTGGTCCCCTTTATGCTCCTTTTCCAACAG
Seq C2 exon
ATTTAGTCCCTCCGGCAGTGTTGTTTCCATGACAGAAAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAGCCTAAGCAACTTAGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043467:ENSMUST00000162226:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types