RnoINT0166969 @ rn6
Intron Retention
Gene
ENSRNOG00000026907 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:RGD Symbol;Acc:1308731]
Coordinates
chr13:78847135-78850101:-
Coord C1 exon
chr13:78849145-78850101
Coord A exon
chr13:78847235-78849144
Coord C2 exon
chr13:78847135-78847234
Length
1910 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTATGCTCCTTTTCCAACAGATT
3' ss Score
10.67
Exon sequences
Seq C1 exon
GGTTGAACGTCTGCCTGTACTTTCAGGCATGACCATGGAGAAAAGTGGAAACATACAACTGGAGATCCCTGACTTCAGCAACTCTGTTCTGAGCCATCTCAACCAGCTACGAATGCAAGGCCGTCTCTGTGATATTGTGGTCAATGTGCAAGGACAGGCTTTCCGGGCTCACAAAGTAGTGCTGGCTGCCAGCTCCCCTTATTTCCGGGATCACATGTCCTTGAATGAAATGAGTACTGTGTCCATTTCTGTCATCAAGAACCCTACTGTTTTTGAACAGCTTCTTTCTTTCTGTTACACAGGGCGGATATGCCTGCAACTAGCAGATATCATCAGCTACCTAACAGCTGCTAGTTTTCTGCAGATGCAGCATATTATAGACAAATGCACACAGATCCTAGAGGGCATTCACTTTAAAATTAATGTGGCTGAGGTTGAAGCAGAATTAAGTCAAACAAGGACAAAGCATCCAGAGAGACCTCCAGAGTCTCACAGGGTAACACCGAATCTAACCCGCTCACTTAGTCCACGCCATAATGCCTCAAAGGGAAACTGGAGAGGACAAGTCAGTGCCGTGCTGGATATCAGAGAGCTCAGTCCTCCCGAGGAGTCCACCAGTCCTCAGATAATTGAACAGAGTTCTGATGTAGAGGGCCGGGAGCCCATTCTCCGAATTAACAGAGCAGGACAGTGGTATGTGGAAACAGGGATAGCAGACCAGGGGCCCCAGAGTGGTGATGAAGTCAGGGTTCTTGGAGCAGTGCACATCAAAACTGAAAATCTGGAGGAGTGGCTTGGGCCGGAGAACCAGCCTTCTGGAGAAGATGGCAGTAGTGCCGAGGAGGTCGCTGCCATGGTGATTGACACCACAGGCCATGGGTCTGTAGGGCAAGAAAGCTACACTTTAGGGTCTTCGGGAGCCAAGGTAGCTCGGCCAACCAGCAGTGAGGTCGACAG
Seq A exon
GTAAGGTTGGTTTCCCCTTTAAAGCTGTTGTACAGGCACCAGAGCCCTCTGTGTTACAGAGGACATCTTTCTAACCTGATGTTCTTATCAGCTTTCTTTGGGAGACTGCAAGTTTGTCAAAAGACTTGCATCATTTTCAAAGCAGGAGGCTCCTGCTTCTGAAATATTGACGATGTGAGAACTATGGTAAAATTAGCTACACCAGTGAATCGGAGTAGCATCTGCAGCCACTCTAGGATCAGTAATTGTCAGGGAGTGGATTGGCAGGGGTCTGGTGACACTGCTGTTTCTCACACAGGTAGGTGACCTTGTGGAATTTGACTTTCCTCATAGCACTGTGTATTTCTCTTTGTCCTTAGCTACCAAAGTAGAGAAAGTTTGGTAACATCAATAATTGTTCTTTTTCAAATTACAGTAATTACAGTACAGTAATTCTAGAGAAAAACTTTTTGAATGTTTTTCAAGTGTCACCTGGTGATGTGTCCTTTGCAACTGCTACTGCCCAGGCCCCAGAGTCCTCACGAGCGCTGCTATGGTCTATGGTCTACACTGTTTTCATATACTGAGTCTGTTAGAAGAGGTCTTTGTGATGGAAATAGCACTGGTTTCATCTAGTCAATTGAAAAAAAAGTTACTAGTTTAGATTGATAATATTTTGTGTGTGTATTTACTTATTTATTTATTATTTATTGAGAAAAGGTTTCTGTAGCTCAGGCCATCCTAGAACTCAGGGCAGTTCTCTTGCCTCAGCCTCCTGAGTACTAGGATTACTGGCATGAGTCACCATATTTGTATTTTTTTGTTGTTATTTTGGGGTGGTTTTGTTTTTGTTTTTCTAGACAGGTTTCTTTGTGTGACCTGGGTTGTCCTAGAACAAGCCGGCATGGAACTCAACTCACAGAGATCTAATTGCCTCTGTTTCCTGAGTGCTAGGATTAAATGGGTGTGCTACCCGCCCCCCCAGCTCACATTTGGCTTTGAATTTTTGTTGTTGTTGTTGTTGTTGTTGTTTTGAGATAGGTAATTCAAGATGGCCTATACTATGTAGCCTAGGCTAACCTCCAACTCAAACATTCTTCCTACCTCAGGCTACCAAGCACTTAAGACGATAGGCTAGCTGGTTCTTTTCCCTGCTTAAAATAGATTGAAATGAATAAAGGCACTGAAAGTCAAGTCTGACTGTCTGGGCTCACCCACGGCATGCACATGGTAGGAGGAGAGAATGAACTCTAGTAAGTTATCATCTCATCTCTACACACGTCTCTCATAAATAAATAAGCAAATAAAACTGATCTTGGGAGTAATTAAAACTAACTCATTTCTTTATAGCTGACAATGTAGACAGACAGGATTTTTTAGCCACTTAGGTGGTCTTCATTTGAAAACTTTCTATCATGTGACCTTGATAAGCTAAATAATCTTCAGCACAGAATATTCATCTCCAGGGTTGGTAGTTGTTGACCTCCTGCACTAGAACTATATTAGAATGTATCGTACATTTTAAAAAAAGCTTTAATCTATATGAACTGTAAACAAATTACCGTAAGAGAAGGAGCAGCCCAAACCCAAATAGTCAAATGAGCCAGAGTTTCCACGCTTGGGATCTTAGCCCTTGGGAGGTTGAAGCAGAAGGATTGCTGTGAGTTGAGGAACATGTACACTTGGAGCCTAGCCTGTACAGTGAGTGCCAGGCCACCCAAGGCTTCCTAGCAAGACCATAGCTCATAGAACTACAGACTTGTCAGTACTTACTAGAGTAGAAAGCTTGTCTTCTATGCTCTGCTTGCTTTGCCGCTTTGAGAATATGTGTCTGACGTAGTGCATTCTTCAGTGATAAGCTAGAACAGAAACAGTATCAAGTCTGTGACACTACTTGTCTATTGGTGCCCTTTATGCTCCTTTTCCAACAG
Seq C2 exon
ATTTAGTCCCTCCGGCAGTGTTGTTTCCATGACAGAGAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAGCCTAAGCAGCTTAGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026907:ENSRNOT00000039082:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGACAGTGGTATGTGGA
R:
GGCTCATCCATTCTCCCAGGA
Band lengths:
357-2267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]