RnoEX0100517 @ rn6
Exon Skipping
Gene
ENSRNOG00000026907 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:RGD Symbol;Acc:1308731]
Coordinates
chr13:78837262-78850101:-
Coord C1 exon
chr13:78849145-78850101
Coord A exon
chr13:78847135-78847234
Coord C2 exon
chr13:78837262-78837747
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTATGCTCCTTTTCCAACAGATT
3' ss Score
10.67
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGGACAAAGCATCCAGAGAGACCTCCAGAGTCTCACAGGGTAACACCGAATCTAACCCGCTCACTTAGTCCACGCCATAATGCCTCAAAGGGAAACTGGAGAGGACAAGTCAGTGCCGTGCTGGATATCAGAGAGCTCAGTCCTCCCGAGGAGTCCACCAGTCCTCAGATAATTGAACAGAGTTCTGATGTAGAGGGCCGGGAGCCCATTCTCCGAATTAACAGAGCAGGACAGTGGTATGTGGAAACAGGGATAGCAGACCAGGGGCCCCAGAGTGGTGATGAAGTCAGGGTTCTTGGAGCAGTGCACATCAAAACTGAAAATCTGGAGGAGTGGCTTGGGCCGGAGAACCAGCCTTCTGGAGAAGATGGCAGTAGTGCCGAGGAGGTCGCTGCCATGGTGATTGACACCACAGGCCATGGGTCTGTAGGGCAAGAAAGCTACACTTTAGGGTCTTCGGGAGCCAAGGTAGCTCGGCCAACCAGCAGTGAGGTCGACAG
Seq A exon
ATTTAGTCCCTCCGGCAGTGTTGTTTCCATGACAGAGAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAGCCTAAGCAGCTTAGCTCCCAG
Seq C2 exon
GTAGAAGAGTCAGCGATGATGGGAGTAAGCGCCTATGTGGAGTATCTCCGAGAACAAGAAGTATCTGAACGATGGTTCCGGTATAATCCCCGCCTCACCTGCATCTACTGTGCCAAATCTTTCAACCAAAAGGGAAGTCTGGACCGCCACATGCGCCTGCATATGGGAATCACACCATTTGTCTGCCGCATGTGTGGGAAAAAGTATACCCGGAAAGATCAGCTGGAATATCACATCCGCAAGCACACAGGCAACAAGCCCTTTCACTGTCATGTTTGTGGCAAAAGTTTCCCCTTCCAGGCCATCTTGAATCAACACTTTCGAAAAAACCACCCTGGTTGTATACCTCTGGAAGGGCCTCATAGCATTTCTCCTGAGACTACTGTCACATCTCGGCAAGCTGAAGAAGGGTCACCTTCACACGAAGAAACAGTTGCTCCTGGAGAATCTGCTCAGGGCTCAGTTTCTACTACTGGGCCAGATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026907_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=1.000 C2=0.323
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.9)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=16.0),PF134651=zf-H2C2_2=WD(100=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGACACCACAGGCCAT
R:
CGGTCCAGACTTCCCTTTTGG
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]