HsaEX0072140 @ hg38
Exon Skipping
Gene
ENSG00000185278 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]
Coordinates
chr1:173870197-173886636:+
Coord C1 exon
chr1:173870197-173871148
Coord A exon
chr1:173873467-173873566
Coord C2 exon
chr1:173885636-173886636
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTATGTTCCTCTTCCAACAGATT
3' ss Score
10.48
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCACAGGGTTACACCAAATCTCAACCGCTCCCTTAGCCCACGACATAATACCCCAAAGGGAAACCGGCGAGGTCAGGTTAGTGCTGTGCTGGATATCAGAGAGCTAAGTCCTCCTGAGGAGTCCACCAGCCCTCAGATCATTGAACCAAGTTCTGATGTAGAGAGCCGGGAGCCCATTCTTCGGATCAACCGAGCAGGACAGTGGTATGTGGAGACAGGAGTGGCGGACCGTGGGGGTCGGAGTGATGATGAAGTTAGAGTTCTTGGAGCAGTACACATCAAAACTGAAAATCTGGAGGAGTGGCTTGGGCCTGAGAATCAGCCTTCTGGAGAAGATGGGAGTAGTGCAGAGGAAGTAACAGCCATGGTGATTGATACCACAGGCCATGGTTCTGTAGGACAGGAAAATTATACTTTAGGGTCTTCAGGAGCCAAGGTGGCTCGGCCAACAAGCAGTGAAGTTGACAG
Seq A exon
ATTTAGCCCCTCCGGCAGTGTTGTTCCCTTGACAGAGAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAGCCTAAGCAACCCAGCTCCCAG
Seq C2 exon
GTAGAAGAGTCAGCAATGATGGGAGTAAGTGGCTATGTGGAGTATCTCCGAGAGCAGGAAGTATCTGAGCGGTGGTTCCGGTACAACCCTCGTCTCACCTGCATCTATTGCGCCAAATCTTTCAACCAGAAGGGAAGCCTGGACCGCCACATGCGCCTACACATGGGGATCACACCATTCGTCTGCCGCATGTGTGGCAAGAAGTATACCCGGAAAGATCAGCTGGAGTATCATATCCGCAAGCACACAGGCAACAAGCCCTTTCACTGTCATGTCTGTGGCAAAAGTTTCCCCTTCCAGGCCATCTTGAATCAGCACTTTCGCAAAAACCACCCTGGCTGTATACCCCTGGAGGGGCCTCACAGCATCTCCCCTGAAACAACTGTCACATCTCGAGGACAAGCTGAGGAAGAGTCACCTTCACAGGAAGAGACAGTTGCTCCTGGGGAAGCTGTCCAGGGCTCTGTGTCCACCACTGGGCCAGACTGAAACATCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185278-'6-15,'6-7,9-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.508 A=0.926 C2=0.349
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=34.1)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=16.0),PF134651=zf-H2C2_2=WD(100=15.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGAATCAGCCTTCTGG
R:
GAGACGAGGGTTGTACCGGAA
Band lengths:
255-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development