BtaEX0040662 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004361 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]
Coordinates
chr16:56696960-56706787:+
Coord C1 exon
chr16:56696960-56697888
Coord A exon
chr16:56699565-56699664
Coord C2 exon
chr16:56706299-56706787
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTCCTCTTCCAACAGATT
3' ss Score
11.4
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGGACCAAGCATGCAGAGGGACCTCCGGAGTCTCACAGAGTTACACCAAATCTAAACCGCTCCCTCAGCCCCCGACATAATACCCTCAAGGGAAACCGGCGAGGTCAGGTGAGTGCTGTCCTGGATATCCGGGAGCTCAGTCCTCCCGAGGAGTCCACCAGCCCGCAGATTATTGAACAGAGTTCTGATGTAGAGAGCCGGGAACCCATTCTTCGAATCAACCGAGCAGGACAGTGGTACGTGGAGACAGGGGTAGCAGACCGAGGAGCCCGGAGTGACGATGAAGTTAGAGTCCTGGGAGCAGTACACATCAAAACGGAAAATCTAGAGGAGTGGCTTGGGCCTGAGAATCAGCCTTCCGGAGAAGATGGGAGTAGTGCAGAGGAAGTCACGGCCATGGTGATTGACACCACAGGCCATGGTTCTGTAGGACAGGAAAATTATGCTTTAGGATCTTCAGGAGCCAAGGTGGCTAGGCCAACAAGCAGTGAGATTGACAG
Seq A exon
ATTTAGCCCCTCCGGCAGTGTTGTTCCCTTGACGGAGAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAACCTAAGCAACCCACTTCCCAG
Seq C2 exon
GTAGAAGAGTCAGCAATGATGGGAGTAAGTGGCTATGTGGAGTATCTCCGAGAGCAGGAAGTATCTGAGCGGTGGTTCCGGTACAACCCCCGTCTCACCTGCATCTACTGTGCCAAATCTTTCAACCAGAAGGGGAGCCTGGACCGCCATATGCGCCTGCACATGGGGATCACACCGTTTGTCTGCCGCATGTGTGGCAAGAAATATACCCGGAAAGATCAGCTGGAGTACCACATCCGCAAACACACAGGCAACAAGCCTTTTCACTGTCATGTTTGTGGCAAAAGTTTCCCCTTTCAGGCCATCTTGAATCAGCACTTTCGCAAAAACCACCCTGGCTGTATACCCCTGGAGGGGCCTCATAGCATCTCCCCTGAAACGACTGTCACATCTCGGGGACAAGCCGAGGAAGAATCACCTTCACAAGAAGAGACAGTTGCTTCTGGGGAAACTGCCCAGGGCTCTGTGTCCACTACTGGACCAGATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004361-'3-8,'3-3,4-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=1.000 C2=0.358
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.9)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=16.0),PF134651=zf-H2C2_2=WD(100=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCACGGCCATGGTGATT
R:
GGCTCCCCTTCTGGTTGAAAG
Band lengths:
255-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development