DreEX6098338 @ danRer10
Exon Skipping
Gene
ENSDARG00000042689 | zbtb37
Description
zinc finger and BTB domain containing 37 [Source:ZFIN;Acc:ZDB-GENE-050208-621]
Coordinates
chr22:16005890-16007867:-
Coord C1 exon
chr22:16006924-16007867
Coord A exon
chr22:16006621-16006720
Coord C2 exon
chr22:16005890-16006411
Length
100 bp
Sequences
Splice sites
3' ss Seq
GTACTTGTTTTTTTCCTCAGGTT
3' ss Score
10.71
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACCATTGAGTCGGGACGAGGTGGGACGACACTAAGTGGGTCCCGCTCCTTGAGTCCCAGACTCACAAGCTCCCGGTTGATTGGCAACACTGGGGTGATCAGCATCCGCGATGTGAGGGAAGTTCGAGAGATTAGTCCCCCTGGGGAGTCCATGAGCCCTCAAATAGTGGAGCACAGTGGCATTGGCTCCGAGGAGGTAGGATCTGGAAAAGAACCCATTCTTCGAATTAACCGAGCCGGGCAATGGTATGTTGAAACAGGACCTGAGGCAGAGAGAGGAGGAGAGGAGAACGTGCGGATGGTTGATGGGTTTCGGATTAAGACAGAAAGGATGGATGAGTGGATGGGGGCAGAGACCCAGGCTTCAGCGGAGGAAGGCAGTGGGGCAGAGGAGGGGCCGACAGTAATGATTGACACCTCAGGACGTAGCACACTAGTGCAGGAAGGAGGAAGAGGTGGGAAAAGTTCCCAGCCGTCCAGTAGCTTCAGTGAAACAGAGAG
Seq A exon
GTTTAGTCCAACAGGTAGTGTGGTGGTCATGGCTGATCGCCAGAGAGCCAAGAGTGAGTCTCCAGGAAGAGTTGACGATCAGAGACATCCCACCTCACAG
Seq C2 exon
GGAGAGGAACAAGCTGTGTTTGACATGGGAGGATATGAGGAATACCTACGAGAACAGGTAGGTGACAGGTGGTTCCGCTACAACCCCCGTCTCACCTGCATTTACTGCTGCAAGTCCTTCAACCAGAAGGGAAGCCTAGATCGTCACATGCGCCTGCACATGGGCATTACCCCTTTTGTCTGCCGAATCTGTGGGAAGAAATACACCCGCAAGGACCAACTTGAGTACCACATCCGTAAGCACACAGGAAACAAGCCCTTTCATTGCCATGTCTGTGGCAAGAGTTTCCCGTTCCAGGCTATCCTCAACCAGCACTTCCGTAAGAACCACCCAGGCTGTGCCCCACAGGAGGTGTCCCATAGTGCCTCTCCCGAGACCACCACGGTCACCTCCCGTGGAGGACAGAACGAAGACGAGTCACCCAGCCAGGAGGAAGCTGAGGGCAATGGTGGAGGGGGAGGTGCTGGCTCATCCTTCGGAGAAGGGGTCCAACCGTCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042689-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=1.000 C2=0.416
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.3)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=14.9),PF134651=zf-H2C2_2=WD(100=14.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATGGATGAGTGGATGGGG
R:
GGAACCACCTGTCACCTACCT
Band lengths:
249-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]