GgaEX0006225 @ galGal4
Exon Skipping
Gene
ENSGALG00000004597 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:HGNC:28365]
Coordinates
chr8:7382138-7387189:-
Coord C1 exon
chr8:7386261-7387189
Coord A exon
chr8:7384733-7384832
Coord C2 exon
chr8:7382138-7382626
Length
100 bp
Sequences
Splice sites
3' ss Seq
GCTCTTCCCCCACCCCACAGATT
3' ss Score
10.33
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
AGGACGAAACATCAGGAGAGACCCCCGGAGTCTCACCGGGTGACGCCAAATCTGAACCGTTCCCTGAGCCCCCGTCACAACACCCTGAAAGGGAGCCGCCTGGGCCAGGTTAGCACAGTGCTGGACATACGGGAGCTCAGCCCACCAGCAGAGTCCACCAGCCCTCAGATAATCGAGCAGAGCTCGGACGTGGAAAGCAGGGAACCCATCCTGCGGATTAACAGAGCGGGACAGTGGTATGTTGAGACGGGAATGGGAGACCGCGGGGGACGGAACGATGACGACGTCCGGGTGCTGGGAGGAGTGCGCATTAAAACGGAGAACCTGGAGGAGTGGCTGGGGACAGAGAACCAGCCGTCAGGAGAAGATGGCAGCAGTGCTGAGGAGGTCACCGCTATGGTCATCGACACCACGGGCCATGGATCAATGAGCCAAGAGACTTATGCGTTAGGGTCCTCCGGAGCCAAAGTGGCCAGGCCGACCAGCAGTGAGATTGACAG
Seq A exon
ATTTAGCCCTTCTGGCAGCATGGTTGCTGTGACTGAGCGGTACAGATCAAAAAGCGAGTCTCCCGGGAGGATGGATGAGCCCAAGCAGCCCAGTTCCCAG
Seq C2 exon
GGGGAGGAATCGGCCATGTTTGGAGTCAGCGGTTACGTGGAATATCTCCGGGAGCAGGAAGTGTCAGAGCGCTGGTTCCGGTACAACCCACGGCTCACCTGCATTTACTGTGCCAAATCCTTCAACCAGAAGGGCAGCCTGGACCGGCACATGCGTCTGCACATGGGCATCACGCCTTTCGTCTGCCGCATGTGTGGGAAGAAGTACACCCGCAAGGATCAGCTGGAGTATCACATCCGCAAGCACACGGGCAACAAGCCCTTTCATTGCCACGTCTGCGGCAAGAGCTTCCCTTTCCAGGCCATCCTCAACCAGCACTTTCGCAAGAACCACCCGGGCTGCGTGCCTCTGGAGGGGCCTCACAGCATTTCCCCCGAGACCACCGTCACGTCCCGGGGGCAGGCGGAGGAGGAGTCCCCCCCCCAGGAGGAAGCTGTCGCTGTGGGGGAGACGGCACAGGGATCTGTGTCCACTACTGGGCCGGATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004597_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=0.853 C2=0.352
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=33.9)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=16.0),PF134651=zf-H2C2_2=WD(100=15.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGAAGATGGCAGCAGTG
R:
AGTAAATGCAGGTGAGCCGTG
Band lengths:
251-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]