HsaEX0072140 @ hg19
Exon Skipping
Gene
ENSG00000185278 | ZBTB37
Description
zinc finger and BTB domain containing 37 [Source:HGNC Symbol;Acc:28365]
Coordinates
chr1:173839335-173855774:+
Coord C1 exon
chr1:173839335-173840286
Coord A exon
chr1:173842605-173842704
Coord C2 exon
chr1:173854774-173855774
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTATGTTCCTCTTCCAACAGATT
3' ss Score
10.48
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
AGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCACAGGGTTACACCAAATCTCAACCGCTCCCTTAGCCCACGACATAATACCCCAAAGGGAAACCGGCGAGGTCAGGTTAGTGCTGTGCTGGATATCAGAGAGCTAAGTCCTCCTGAGGAGTCCACCAGCCCTCAGATCATTGAACCAAGTTCTGATGTAGAGAGCCGGGAGCCCATTCTTCGGATCAACCGAGCAGGACAGTGGTATGTGGAGACAGGAGTGGCGGACCGTGGGGGTCGGAGTGATGATGAAGTTAGAGTTCTTGGAGCAGTACACATCAAAACTGAAAATCTGGAGGAGTGGCTTGGGCCTGAGAATCAGCCTTCTGGAGAAGATGGGAGTAGTGCAGAGGAAGTAACAGCCATGGTGATTGATACCACAGGCCATGGTTCTGTAGGACAGGAAAATTATACTTTAGGGTCTTCAGGAGCCAAGGTGGCTCGGCCAACAAGCAGTGAAGTTGACAG
Seq A exon
ATTTAGCCCCTCCGGCAGTGTTGTTCCCTTGACAGAGAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAGCCTAAGCAACCCAGCTCCCAG
Seq C2 exon
GTAGAAGAGTCAGCAATGATGGGAGTAAGTGGCTATGTGGAGTATCTCCGAGAGCAGGAAGTATCTGAGCGGTGGTTCCGGTACAACCCTCGTCTCACCTGCATCTATTGCGCCAAATCTTTCAACCAGAAGGGAAGCCTGGACCGCCACATGCGCCTACACATGGGGATCACACCATTCGTCTGCCGCATGTGTGGCAAGAAGTATACCCGGAAAGATCAGCTGGAGTATCATATCCGCAAGCACACAGGCAACAAGCCCTTTCACTGTCATGTCTGTGGCAAAAGTTTCCCCTTCCAGGCCATCTTGAATCAGCACTTTCGCAAAAACCACCCTGGCTGTATACCCCTGGAGGGGCCTCACAGCATCTCCCCTGAAACAACTGTCACATCTCGAGGACAAGCTGAGGAAGAGTCACCTTCACAGGAAGAGACAGTTGCTCCTGGGGAAGCTGTCCAGGGCTCTGTGTCCACCACTGGGCCAGACTGAAACATCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185278_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.522 A=0.900 C2=0.347
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=34.1)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=16.0),PF134651=zf-H2C2_2=WD(100=15.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGAATCAGCCTTCTGG
R:
GAGACGAGGGTTGTACCGGAA
Band lengths:
255-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)