MmuEX0052672 @ mm9
Exon Skipping
Gene
ENSMUSG00000043467 | Zbtb37
Description
zinc finger and BTB domain containing 37 [Source:MGI Symbol;Acc:MGI:2444467]
Coordinates
chr1:162947887-162962895:-
Coord C1 exon
chr1:162961936-162962895
Coord A exon
chr1:162959773-162959872
Coord C2 exon
chr1:162947887-162950537
Length
100 bp
Sequences
Splice sites
3' ss Seq
TTATGCTCCTTTTCCAACAGATT
3' ss Score
10.67
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGGACAAAGCATCAAGAGAGACCTCCAGAGTCTCATAGGGCTACACCAAATCTAAACCGCTCACTTAGTCCACGGCATAATGCCTCAAAGGGAAACTGGAGAGGGCAGGTCAGTGCCGTGCTGGATATCCGAGAGCTCAGTCCCCCGGAGGAGCCCACCAGTCCTCAGATAATTGAACAGAGTTCTGATGCAGAAGGCCGGGAGCCCATTCTTCGAATCAACAGAGCAGGACAGTGGTATGTGGAAACAGGACTAGCAGACCAGGGGGCCCGGAGTGGTGACGAAGTTAGGGTTCTTGGAGCAGTGCACATCAAAACTGAAAATCTAGAAGAGTGGCTTGGGCCAGAGAATCAGCCTTCTGGAGAAGATGGGAGTAGTGCAGAGGAAGTCACAGCCATGGTGATTGACACCACAGGCCATGGTTCTATAGGACAGGAAAGTTATACTTTAGGGTCTTCAGGAGCCAAGGTAGCTCGGCCAACCAGCAGTGAAGTTGACAG
Seq A exon
ATTTAGTCCCTCCGGCAGTGTTGTTTCCATGACAGAAAGACACAGAGCCAGAAGTGAGTCTCCTGGGAGAATGGATGAGCCTAAGCAACTTAGCTCCCAG
Seq C2 exon
GTAGAAGAGTCAGCAATGATGGGAGTAAGCGCCTATGTGGAGTATCTCCGAGAACAAGAAGTGTCCGAACGATGGTTCCGGTATAATCCCCGTCTCACCTGCATCTACTGTGCCAAATCTTTCAACCAAAAGGGAAGTCTGGACCGCCACATGCGCCTGCATATGGGAATCACACCGTTTGTCTGCCGCATGTGTGGAAAAAAGTATACCCGGAAAGACCAGCTGGAATATCACATCCGCAAGCACACAGGCAACAAGCCCTTTCACTGTCACGTTTGTGGCAAAAGTTTCCCCTTCCAGGCCATCTTGAATCAGCACTTTCGAAAAAACCACCCTGGTTGTATACCCCTGGAAGGGCCTCATAGCATTTCTCCTGAGACTACTGTCACTTCCCGGCAAGCTGAAGAAGGGTCACCTTCACACGAAGAAATAGTTGCTCCTGGAGAATCTGCCCAGGGCTCAGTTTCTACTACTGGGCCAGATTGAAACATTGAGGGGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043467_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.481 A=1.000 C2=0.304
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=35.5)
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=16.0),PF134651=zf-H2C2_2=WD(100=15.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATTGACACCACAGGCCAT
R:
CGGTCCAGACTTCCCTTTTGG
Band lengths:
247-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types