BtaINT0163651 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47662036-47662719:-
Coord C1 exon
chr16:47662565-47662719
Coord A exon
chr16:47662173-47662564
Coord C2 exon
chr16:47662036-47662172
Length
392 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CTGTGTCCCTGCCTGGACAGGAA
3' ss Score
8.94
Exon sequences
Seq C1 exon
TGTCCCACCTGTGCCAAGTGCTTCCTGTCCCGGACGGAGCTGCAGCTGCACGAGGCATTCAAGCACCGTGGGGAGAAGCTGTTTGTGTGCGAGGAGTGCGGGCACCGGGCATCGAGCCGGAATGGCTTGCAGATGCACATCAAGGCCAAGCACAG
Seq A exon
GTGGGACTGTCCTCCCTGGACTGCCCTCCCCAGGCCCGGCCCTGCTGCCACTCACAGGGGCCAGAGTGCCCCCACCTGTGTCCAAAGCCTGCAGCCCTTCTGGAGGGGAGGACCTGAGGGATCAGGCAGCTTGCCAAGCAGGGAGGCTGTGGGTGGGGATTCATGCAGGATGAGGCTCTGGGCCTCCCTGGGCAGAGTCCTGGTGTCCCGTGGCTCCTGGGATGGAGCTCATGCCCTCTTTTCCCCAGGCAGCCAGAGTCTATTCTCACAGCTCAGGCAGGCTGGCCTCAGCCTAGCCTGTTTCCTTGGCTCTGGGATCAGGCGTGTTCCCAGCTGCAGGGGCACTAAGGGGACTGCTTCTTTTGGTGACGCCTGTGTCCCTGCCTGGACAG
Seq C2 exon
GAACGAGCGGCCATACGTCTGTGAGTTCTGCAGCCACGCCTTCACCCAGAAGGCCAATCTCAACATGCACCTGCGCACGCACACGGGCGAGAAGCCCTTCCAGTGCCACCTTTGTGGCAAGACCTTCCGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735:ENSBTAT00000022249:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(33.3=17.3),PF134651=zf-H2C2_2=WD(100=51.9),PF134651=zf-H2C2_2=PU(37.0=19.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTGCCAAGTGCTTCC
R:
CTTGGGTGCGGAAGGTCTTG
Band lengths:
287-679
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development