RnoINT0167024 @ rn6
Intron Retention
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169192788-169193569:-
Coord C1 exon
chr5:169193415-169193569
Coord A exon
chr5:169192925-169193414
Coord C2 exon
chr5:169192788-169192924
Length
490 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
TTGTGTTCCCAAACGAACAGGAA
3' ss Score
5.13
Exon sequences
Seq C1 exon
TGCCCCACTTGTGCCAAGTGCTTCCTGTCTAGGACGGAGCTACAGCTGCACGAGGCTTTTAAGCATCGTGGAGAAAAGCTCTTTGTGTGTGAAGAATGTGGGCACCGGGCCTCAAGCCGCAATGGGCTGCAGATGCACATCAAGGCCAAGCACAG
Seq A exon
GTATCAACGAGTGCTTGCTCTCTCTGGTGTGGCCGCGTTACCTCAGGAAGCGGCATCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCACAAAAAAAAAAACCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTCCCTCTCCTCGAGTGTAGCACTCATAGCCCTTCCAGGGTGGAGGTGAGAGACAGGCAGGTTTGTTAGGTTAGTGGGGAGGACTTAGGCTGAGGCAAGTGTCTGCCTCCTAGGCTAATTCTTATCCTTTAGCTTCCTGACTCGCTGCAGAATAGACTTGTCTTTTGCTTCTGCGAATAGTGGTGTCCCTTGCTTGGTACTACCCAAGCCCTGCTGCTTGCTTAGCACGTCTAGCTCCAGCAGAGTGGGTGGAAGGGGAGGGCTTCCCCAGGGTAATGACCCTCTGCCTTGTGTTCCCAAACGAACAG
Seq C2 exon
GAATGAAAGGCCGTATGTCTGTGAGTTCTGCAGCCATGCATTCACCCAGAAGGCCAACCTCAACATGCACCTGCGCACACACACAGGAGAGAAGCCCTTCCAGTGCCACCTCTGTGGGAAGACCTTCCGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595:ENSRNOT00000012745:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(33.3=17.3),PF134651=zf-H2C2_2=WD(100=51.9),PF134651=zf-H2C2_2=PU(37.0=19.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCACTTGTGCCAAG
R:
CTTGGGTGCGGAAGGTCTTC
Band lengths:
292-782
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]