DreINT0177299 @ danRer10
Intron Retention
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25017579-25018830:-
Coord C1 exon
chr23:25018676-25018830
Coord A exon
chr23:25017716-25018675
Coord C2 exon
chr23:25017579-25017715
Length
960 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
TTTGTTGTGCTTCGTTTCAGAAA
3' ss Score
9.81
Exon sequences
Seq C1 exon
TGTCCGCTGTGCCCCAAGTGTTTCCTGTCCCGCACTGAGCTGCGTCTGCATGAAGCTTCTAAACATCGCGGAGAGAAACTGTTTGTGTGTGAGGAGTGCGGCCACCGAGCCTCCAGCCGCAACGGCCTGCAGATGCACATCAAAGCCATTCACAG
Seq A exon
GTAATGACTGGCAGAAGATTTCAATCTTGACTTATTCATTATTTTAAACTGATAACTATTTTTGTAAAATTTACAGCAATTATTTATTATCAGCCATAAAACTAATATAGAAAAATCTTTAAAAAACAGGCAAATAGGGAAACAAATTAGATTATAGTTGTTGTTGTTATAATTATTATTATTATTATTATTATTATTATTAATAGTAGTAGTAGTACTACGACTAGTAGTAGTAGTAGTAGTAGTAGTAGAAGCAGCAGCGGCAGCAGCAGTAGGGTAGTGGGGTGTCGCAGACGAAAATGAACAGTGGAGGGGAGGGTCGAAGGGTTGGGGGTCACGGACAAAATTGAAGAGCGGGGAGGGGATTTGATTGAGCCCCCTAATTTTAACTCTGGGGGGCCCCAAAACAGCGTGGGCCCTTAGAATTGTGCCAATACAGTCGTACTAGTAGCAGCAGCAGCAGTAGTAATATTCATGTGTTTATTTAATCAAATTATAAAAAAGCATTAGCAATTTAATGCTATTGATCTGTAAAGTTTTTTATAAAAGTACATTTATTTTAAAGAACAAGTTTAATAATTGTTATTGTTTGTGTTTTTTCATGAAAACTAGTATTTATTATAGGTTTTTGTCTTTCATTGACCTTTTATTTTAAGAAGAAACTAATAAAGGAATCAGATTTTTTTAAAGCCATAAAACTAATATCAAATATTTATTTGAAAAACAGGCAAACAAGGAAACAAGTTAGATTGCAGTTGGTGTTGTTCTTCTTATTAGTTGTAGTAAAGATATTTATTTATTTATTTAATTTTTACAAATAGTAAAAAAAATTAAAAATCACTGTACGAGGAACACTGTAACGCACCAGCCAATATGATATGGCTATAATCTATTTTGCAATTTTTGTTTGTCCATTGGAATTATTGATTATTGAGTCGTATTTGTTGTGCTTCGTTTCAG
Seq C2 exon
AAATGAACGCCCTTTTGTGTGTCAGCTCTGCAATCATGCTTTTACACAGAAAGCCAATCTGAGCATGCACCTAAGAACACATACAGGAGAGAAACCTTTCCAGTGCCACCTCTGCGGGAAGACATTTCGCACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263:ENSDART00000144903:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(33.3=17.3),PF134651=zf-H2C2_2=WD(100=51.9),PF134651=zf-H2C2_2=PU(37.0=19.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGTGCCCCAAGTGTTTC
R:
TGAGTGCGAAATGTCTTCCCG
Band lengths:
286-1246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]