MmuINT0177738 @ mm9
Intron Retention
Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:151394888-151395552:-
Coord C1 exon
chr4:151395398-151395552
Coord A exon
chr4:151395025-151395397
Coord C2 exon
chr4:151394888-151395024
Length
373 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TTGTGTTCCCATCTGACCAGGAA
3' ss Score
8.22
Exon sequences
Seq C1 exon
TGCCCCACTTGTGCCAAGTGCTTCCTGTCTAGGACGGAGCTACAGCTGCACGAGGCTTTTAAGCATCGTGGAGAAAAGCTCTTTGTGTGTGAGGAATGCGGGCACCGGGCCTCGAGCCGCAACGGACTGCAGATGCACATCAAGGCCAAGCACAG
Seq A exon
GTATGAAGGAGGAGTGGAGTGCTCCCTCTGTGCAGTGTGGCCCTGCTACCACAGGAAGCGGCCACCACCTCCTCCCTGAGTCTCGCACTTGTAGCCCTTCCAGGGTGGAGGTGAGAGACAGGCAGTTTGCTAGGCTATCGGGGAGGACTCAGGCTGGGGCAGGTCTCTGCCTCCCCTCCCGGAGCTAATCCTTCTCCTTTAGCTTCCTGACTCCCTACAATAGAGATTTGTCTTTTGCTTCTGGGAATGGTGGTATCCCTTGCTGGCTACCCAAGCCCTGCTGCTTGTTACCATGTCCAGCTCCAGCAGAGTAGGTGGAGAGGGATGGCGTCCCCACAGTGATGGCCTCTGCTTTGTGTTCCCATCTGACCAG
Seq C2 exon
GAATGAAAGGCCTTATGTCTGTGAGTTCTGCAGCCATGCCTTCACCCAGAAGGCCAACCTCAACATGCACCTGCGCACACACACCGGCGAGAAGCCTTTCCAGTGCCACCTCTGTGGGAAGACCTTCCGCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952-Zbtb48:NM_133879:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=NA C2=0.355
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(33.3=17.3),PF134651=zf-H2C2_2=WD(100=51.9),PF134651=zf-H2C2_2=PU(37.0=19.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCCACTTGTGCCAAG
R:
CTTGGGTGCGGAAGGTCTTC
Band lengths:
292-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: