GgaINT0134600 @ galGal3
Intron Retention
Gene
ENSGALG00000000637 | ZBTB48
Description
NA
Coordinates
chr21:552917-553824:-
Coord C1 exon
chr21:553670-553824
Coord A exon
chr21:553054-553669
Coord C2 exon
chr21:552917-553053
Length
616 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGCCTTTCCCCTGCCCACAGGAA
3' ss Score
12.47
Exon sequences
Seq C1 exon
TGCTCAAGTTGCTCCAAGTGCTTTCTGTCTCGGACAGAGCTGCGCCTGCACGAGGCATTCAAACACCGGGGAGAGAAACTGTTTGTCTGCGAGGAGTGTGGACACAGAGCCTCAAGTCGCAACGGCTTGCAGATGCACATCAAGGCCAAGCACAG
Seq A exon
GTATGACGTGACCTCTTCCCTCCTCTCTGTCACTACTGAACTTCTTTTCTCCCCGTGCTCCTGTGGGGTCGGTGCTGGAGAGTCTCCTGCAGGGTGTGGGGTGGCTGAGCGGTGCTTACTGCCCTCCAACTTCCTTGGAGGTGATGTGCTGCAGTTTCTGACAACTGCAGGTTGCTGGTGTTGACAGCTGTTGGTGAGTGGGCAAACTGTGGTCCTGCTTGCCTCCCTTCCAAAGGAAATAAGTACTGTTTGCACTTCCACTGAGGGTAATAATGCAGGTGATGGCTGAAGCTCATCAGCTATCCTGCCTGTCCTTGAAGTGGTGAGCTTGTGTTAGCTCTTCACACTTCCCTTAGAGCTCTGGTTCCTGGGCTGGTTATATGGTGCCTGAGGGGTAGGAAGCACCAGCTCTGCACTTCAGGAGCATATGGGTGTAGAGGAGCATTTGTGCAAAATACTTCAGTTTGAGACAAATTGAAGTAGGATTTAATTGCAGTGCTTGGAGAGAGTTGGGACAGCTAGTGTCAGGGACTGAACCTGACAGAGGCAGAGATGAAGGTGACAGTTCTCCATCTGGGGGCTGCCTAAGGCTCAGCTGCCTTTCCCCTGCCCACAG
Seq C2 exon
GAACGAGCGTCCCTACGTCTGTGAGTTCTGCCATCACGCCTTCACACAGAAAGCAAACCTCAACATGCACCTGCGCACACACACTGGCGAGAAGCCCTTCCAGTGCCACCTCTGCGGCAAGACTTTCAGGACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637:ENSGALT00000000909:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(33.3=17.3),PF134651=zf-H2C2_2=WD(100=51.9),PF134651=zf-H2C2_2=PU(37.0=19.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAAGTTGCTCCAAGTGCT
R:
TGTGTCCTGAAAGTCTTGCCG
Band lengths:
289-905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]