BtaINT0163654 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47660994-47661535:-
Coord C1 exon
chr16:47661447-47661535
Coord A exon
chr16:47661358-47661446
Coord C2 exon
chr16:47660994-47661357
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TGAGACCCCCTAACCCCTAGGCC
3' ss Score
6.49
Exon sequences
Seq C1 exon
CTGTGGAGCAGCTGCGCGTGCACGTGAGGAGACACAAGGGGGTCAGGAAGTTCGAGTGCACTGAATGTGGCTACAAGTTCACCCGGCAG
Seq A exon
GTAGGCCTGGCTGCCTTGCCTCCTCCCGCCCCTTCGGGCCCCTGAACCCTCCTCCCTCTGCACCCAGCCTGAGACCCCCTAACCCCTAG
Seq C2 exon
GCCCACCTGCGGAGGCACATGGAGATCCATGACCGGGTGGAGAACTACAACCCCAGGCAGCGCAAGCTCCGGAACTTGGTCATCGAGGACGAGAAGATGGTGGTGGTGGCACTCCAGCCGCCCCCCGACTTGGAGGTGGGCTCAGCCGAGGTCATCGTGGAGTCACTGGCCCATGGCAGCCTGGCCTCCCAGCTCCCTGGCCAGAGACTGTGTGCGGAGGAGAGCTTCACGGGTGCGGGCGTCATGGAGCCCTCGCTCATCATCACGGCCGCCATCCCCGAAGACTGTGACACATAGCCCCTGACCCGTGCACGGTCCCCTTGGTCCCAGCCCCCAATAAACCACAGGGCTTTGGACTTGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735:ENSBTAT00000022249:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(0.1=0.0),PF095265=DUF2387=FE(44.6=100),PF134651=zf-H2C2_2=WD(100=86.7)
A:
NA
C2:
PF095265=DUF2387=PD(43.1=28.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACACAAGGGGGTCAGGAA
R:
CACCACCACCATCTTCTCGTC
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development