DreINT0177293 @ danRer10
Intron Retention
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25014758-25015487:-
Coord C1 exon
chr23:25015399-25015487
Coord A exon
chr23:25015319-25015398
Coord C2 exon
chr23:25014758-25015318
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTCCATCTTAACTTTACCAGGCA
3' ss Score
5.48
Exon sequences
Seq C1 exon
CCATTGAGCAGCTCCGGGTTCATGTACGGCGTCACAAGGGCATGAGGAAATTTGAGTGCACACTTTGTGGTTACAAGTTCACCAGACAG
Seq A exon
GTAAGCATCACCAATATTTATGACGCATCATTTCCAACTTGCCATATAAGATCTCAGTGTCTCCATCTTAACTTTACCAG
Seq C2 exon
GCACATTTGCGGAGACACACTCAGATCCACAACCGCATGGAAAACTACAGTCCCAGACAGAGGAGATTACGTAACCTGGTTGTGGAGGACGCGAGCGCAGCAGCTGCTTCATCCGGTCTTCCGGTCCAGACAGAGGCTCAGGCAGAACCAGCAGACATAGTTAGTATAGTTATCCAGCAAGAGGGTGCTGCAGAAACAGGAGGAGAGCAGGCCTCGTATCCTGTCACTGATGGAGCAGTGAATGCTGAACAGACTGGCTTTGCTCTGGCTGAACGAGAAGATGGAGTCGCGCAGACGGAGTTTACTGTAGCAGATGTGATGGAGCAGACGCTGCTAGTGCGCGTACAGGAGGCGTATCCTATACATCAGTCCGATGTGGTGGTGGAGATTCCCAACACTGAGGCTGATAGAAAAGACTAAATGAAGGAGACTCGTTGACTCCAGAAAAAAAAATAGACAAAAAGACATCAAGGAATTTGAAGTTATTCAGTGTAAATAAACAGCTTCCATGCATGGGAAAACAAGTAAGAAATGCCTTGTATGTTAGAAAACAATGAATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263:ENSDART00000144903:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.460
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=86.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCACAAGGGCATGAGGAAA
R:
GAAGACCGGATGAAGCAGCTG
Band lengths:
181-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]