MmuINT0177732 @ mm10
Intron Retention
Gene
ENSMUSG00000028952 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:MGI Symbol;Acc:MGI:2140248]
Coordinates
chr4:152019774-152020278:-
Coord C1 exon
chr4:152020190-152020278
Coord A exon
chr4:152020121-152020189
Coord C2 exon
chr4:152019774-152020120
Length
69 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TGAGCTTGGCTTCTCCCCAGGCT
3' ss Score
6.49
Exon sequences
Seq C1 exon
CTGTGGAACAGTTACGAGTGCACGTCAGGCGACACAAAGGTGTGAGAAAGTTCGAGTGCACCGAGTGTGGCTACAAGTTCACGCGGCAG
Seq A exon
GTAGGCCGGGCCGGGTCCCCTGCTCCCCTGCTCCCTTCCGTCCCCGCTCTGAGCTTGGCTTCTCCCCAG
Seq C2 exon
GCTCACCTGCGGAGGCACATGGAGATCCACGACAGAGTGGAGAACTACAATCCCCGGCAGCGCAAGCTCCGGAACCTCATCATTGAGGATGAGAAGATGGTGGTCGTGGCTCTCCAGCCCCCTGCAGACCTGGAGGTGGGCTCTGCTGAGGTCATTGTGGAGTCCCTGACCCAGGGTGGCCTTGCCTCCCAACTCCCTAGCCAGAGACTGTGTTCAGAGGAGAGCTTTGCTAGCCCTGGCGTCCTGGAGCCCTCTCTCATCATCACCGCTGCTGTTCCCGAGGACTGTGACACGTAGACCCCTGCCCGGATGGCCCCACTGACCAATAAACATGTGACTTAGCACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028952:ENSMUST00000155389:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=86.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAGTTACGAGTGCACG
R:
TCAATGATGAGGTTCCGGAGC
Band lengths:
172-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types