GgaINT0134603 @ galGal3
Intron Retention
Gene
ENSGALG00000000637 | ZBTB48
Description
NA
Coordinates
chr21:550988-552165:-
Coord C1 exon
chr21:552077-552165
Coord A exon
chr21:551769-552076
Coord C2 exon
chr21:550988-551768
Length
308 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGCCTTTCTCCCTCTTGAAGGCA
3' ss Score
9.74
Exon sequences
Seq C1 exon
CTGTTGAGCAGCTGCGTGTCCACGTCCGCAGGCACAAAGGAGTGAGGAAGTTTGAGTGCACTGAGTGTGGTTACAAGTTCACACGGCAG
Seq A exon
GTAGGACACGGCTCGCTGCTGGGATGTGTGTGACTGACACCACATACCTGCTGGCAGCACAAGTACCTGGGGCTGCTCTGCTGCAGATTCCCATGTTGTAAACAGGTTTCTTTGCACTGGGTGTTCCCAGGGCTGTAGGCAGTATGGTCAGCACGCAGGGTGCTGTGCTCGCCGCTGGGCAGCCCTCCCCTTACGACCCCTGCTGTGTGTGGGTGCAGGAGAGTTTTGCCGTGCTTTTGCCAGCCCTCCCTTTCAGAGGAGCACAGCACACCAGGCAAACCCTTCCTGTGCCTTTCTCCCTCTTGAAG
Seq C2 exon
GCACACTTGAGGCGCCACATGGAGATCCACGACCGGGTGGAGAACTACAACCCCCGGCAGAGGAAGCTTCGAAATCTGATCATTGAGGATGAGAAGGCGGTGGTGGTGGCACTGCAGCCACCCCAGGAGCTGGAGGTGGGCTCAGCTGAGGTCATCGTGGAGTCCCTGTCCCACGGCCCCCTGCCTGAGGAGATCCCCGTGCAGAGACTCTGTTCAAATGACAACTTCCCTACAGCAGATGTGATTGAGCAGTCACTGATAATAACTACAACAATTCCTGATGACTGTGAAACATAACGTGACTGCACGCATCCTTCCTACCAAACAAAGCACCGGGCTGGAGTGACTCTGCTGCATTTGTTCTTTTCAGCCTCTGGTGGCTCTGAGTTGTACATCCAGCCCTTCTCCCTCCTCCCTCCACGTAACGATCCCAACCCTGGATTGCAGGGAACATTTCTAATGAAGTGATAATCAGGTACCAAAATAAGAAATATGAAGCTACTCAGAATGACTACTTAAAATGTACATACAATGTATGAGACGAGATGTGATTGATGACTCCATACATGTAATACTGTGAATTGTTTTTTAATGAGCTCTCAGCTGTGGCCGGAAGGGAAGGCTGGCTCACCTCTTGCTCCAGTGCTAGCTCTTACCTTGCTCCATTAGTTTGATGCTGATGATTAAGGCTCTTCCAGAAGAGTGTGACTCCGTCCCTTTCCTTAAACATGTGCTGAAATGATCCATCTCCTCAATTAAATCTCTGCATTGTGGTTTCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637:ENSGALT00000000909:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=86.7),PF095265=DUF2387=FE(45.3=100)
A:
NA
C2:
PF095265=DUF2387=PD(42.2=27.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTACAAGTTCACACGGCA
R:
TTTGGTAGGAAGGATGCGTGC
Band lengths:
347-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]