RnoINT0167018 @ rn6
Intron Retention
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169191753-169192269:-
Coord C1 exon
chr5:169192181-169192269
Coord A exon
chr5:169192110-169192180
Coord C2 exon
chr5:169191753-169192109
Length
71 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GAGCGCCTGCTTCTCCCCAGGCT
3' ss Score
7.18
Exon sequences
Seq C1 exon
CAGTGGAACAGTTACGGGTGCACGTCAGACGACACAAAGGCGTGAGAAAGTTCGAGTGCACCGAGTGTGGCTACAAGTTCACTCGGCAG
Seq A exon
GTAGGCCAGGCTGGGTCTCCTGCTCCCCTCCTCCCTTCCATGCCCAGCTCTGAGCGCCTGCTTCTCCCCAG
Seq C2 exon
GCTCACCTGCGGAGGCACATGGAGATCCACGATAGAGTGGAGAACTACAACCCTCGGCAGCGCAAGCTCCGGAACCTCATCATCGACGATGAGAAGATGGTGGTGGTGGCTCTCCAGCCACCTGCAGACCTGGAGGTGGGCTCCGCAGAGGTCATTGTGGAGTCCCTGACCCAGGGTGGCCTTGCCTCCCAACTCCCTAGCCAGAGACTGTGTTCAGAGGAGAGCTTTGCTAGCTCCGGGGTCCTGGAGCCGTCTCTCATCATCACGGCTGCTGTCCCTGAGGACTGTGACACGTAGCCTGTCCAGTGTCCCCTTGACCAATAAACATGTGACTTAGGATTCCCTTGTTCAGTGGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595:ENSRNOT00000012745:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(0.1=0.0),PF095265=DUF2387=FE(45.3=100),PF134651=zf-H2C2_2=WD(100=86.7)
A:
NA
C2:
PF095265=DUF2387=PD(42.2=27.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGAACAGTTACGGGTGC
R:
GTCGATGATGAGGTTCCGGAG
Band lengths:
176-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]