BtaINT0164459 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007730 | ZFX
Description
Bos taurus zinc finger protein, X-linked (ZFX), mRNA. [Source:RefSeq mRNA;Acc:NM_177490]
Coordinates
chrX:126151664-126152411:-
Coord C1 exon
chrX:126152268-126152411
Coord A exon
chrX:126151817-126152267
Coord C2 exon
chrX:126151664-126151816
Length
451 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TTCTAAAATTTTCTACTTAGATG
3' ss Score
6.78
Exon sequences
Seq C1 exon
GTGGGACTGTAGACATTGTGGAGAGTGAGCCTGAGAATGATCATGGAGTTGAACTACTTGATCAGAATAACAGTATTCGTGTGCCAAGAGAAAAGATGGTTTATATGACTGTCAACGACTCTCAGCAAGAAGATGAAGATTTAA
Seq A exon
GTAAGTAGGTGGCCTTTTTGTGGGAGAGAATTTTTGTTCTTGTAGCTCTTTTTTTTAAAAAATATGACCAGTAACTGGAGGAAACAAGTAGCAGTATTATAGAGACTATGATTCTGCTGTATTCCAAGAGAAACATCAATGACTTACTATGTGTGCTTAGAATATGGCTTTAAAAACAAATTATGGAACTGTATTCAAAATCGTATAATAAACCATAATGGAAAAGAATATGGAAAGATAAAATTAAAGAAAGCAAATTATGTTAAAAGCCAAGAAATACATGATTCATTCAACAAATATTGATTGAGTGCTTACTATGTGAAAGCTGTGTTCTAGGTATATAACATGTGAACCTTCTTTCTACTTGTCTGTTAACCGAATTCACGTGAAAATATCTTTCCTGTGATCTCTGTAAACGTGGTCACAGAAGTTTCTAAAATTTTCTACTTAG
Seq C2 exon
ATGTTGCTGAAATTGCAGATGAAGTTTATATGGAAGTGATTGTAGGAGAGGAGGATGCTGCTGCCGCTGCAGCAGCCGCTGCCGCCCATGAGCAGCAGATGGATGACAACGAAATCAAAACCTTCATGCCGATAGCATGGGCAGCAGCTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007730:ENSBTAT00000010165:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.878 A=NA C2=0.254
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.3=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACTGTAGACATTGTGGAGA
R:
GTAAGCTGCTGCCCATGCTAT
Band lengths:
295-746
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]