DreINT0177966 @ danRer10
Intron Retention
Gene
ENSDARG00000074453 | zfx
Description
zinc finger protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-061220-2]
Coordinates
chr24:16871705-16872279:+
Coord C1 exon
chr24:16871705-16871842
Coord A exon
chr24:16871843-16872144
Coord C2 exon
chr24:16872145-16872279
Length
302 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
GCATGTTCTTCCCCAAACAGATG
3' ss Score
9.08
Exon sequences
Seq C1 exon
GAGGCACAGTCGACATAGGAGACGCTGAGCTAGATGTGGATGAAACCGTGGAGCTGGTGGATTCTTCTGGACTGCCCATACGAGAGAAAATGGTGTACATGTCAATGGATGAAGCCAATCAAAGTCAGGATGACATCA
Seq A exon
GTGAGTCTTGTTACTGTCAGTTTCATATGAAGGGGATTCTGTAAAGGGGTAGTTCACCCAAAAATGAAAAGCGGTTGACTTGCTTGCTTCGGTTGACAACAAACCCAGAATGTTGAAAAAAATGCAGCCATTGTCATCCATAGTAGGAAAAAAAATAGTATGGACATCAGTGACTCTTCCCCATCATTCTTTAGTATATCTTCCTTTGAGTTGAGCAGATGAAAGAAACTCAATATTTGGCGGAACTATCCCTTAAATATGAAGAGCGGCTCTGTTGAGACTGCATGTTCTTCCCCAAACAG
Seq C2 exon
ATGTGGCTAAAATCACAGATGAGGTCTACATGGAAGTGGTGGTTGGGGGTGAAGACCCTGGAAATGTTCAGAGGACACTTGAAAACGCATCACTTAGCAAAGACTTCATGCCTGTGGCTTGGGCAGCTGCTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074453:ENSDART00000149149:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.261
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.6=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTCGACATAGGAGACG
R:
CGTAAGCAGCTGCCCAAG
Band lengths:
270-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]