RnoINT0168833 @ rn6
Intron Retention
Gene
ENSRNOG00000005624 | Zfx
Description
zinc finger protein X-linked [Source:RGD Symbol;Acc:1562664]
Coordinates
chrX:63165125-63165761:-
Coord C1 exon
chrX:63165618-63165761
Coord A exon
chrX:63165275-63165617
Coord C2 exon
chrX:63165125-63165274
Length
343 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TCATACAATTTTCTACTTAGATG
3' ss Score
6.9
Exon sequences
Seq C1 exon
GTGGAACCGTAGACATTGTGGAAAGCGAGCCTGAGAACGAGCATGGGGTTGAACTGCTTGATCCAAACAACAGTATGCGTGTTCCCAGAGAAAAGATGGTTTATATGGCTGTTAATGACACTCAGCAAGAAGAGGAAGAATTGA
Seq A exon
GTAAGTAGACGGTCTTTCTGGGGAGAAAATGTGTTTTTAAGTGTTTACTCTCTTTAATGGTCAGTATTTGAAGGAAATAAGTAGCGTCACTTTAGAAATTATTACGCTGTCATGTTCTCAGGGAGGCATTGACGCGTATGTTTACAATGTTTGCTACTTTAAAACTAAATTATGGTGAAAACCAAGGAAAGAGTCATTGAGCAAGCGTTTATTTTACAAAAGCTGTATTCCAGGTGATGTTTAGATTTCTTCCCATTTGCATATTAGCTGAATTCAAATAAAAGTATCTTTCCTATGAGCTCTGAGAACCTGATCAGAAAAGTTCATACAATTTTCTACTTAG
Seq C2 exon
ATGTTGCTGAAATTGCTGATGAAGTTTATATGGAAGTGATTGTTGGAGAGGAGGATGCTGCAGCCGCAGCTGCAGCCGCAGTGCATGAACAGCAAGTGGAGGACAACGAAATGAAAACCTTCATGCCGATTGCGTGGGCAGCTGCTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005624:ENSRNOT00000065194:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=NA C2=0.206
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PD(0.7=2.0),PF047048=Zfx_Zfy_act=PU(33.3=98.0)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAACCGTAGACATTGTGGA
R:
CGTAAGCAGCTGCCCACG
Band lengths:
294-637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]