GgaINT0111616 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:121646946-121647315:-
Coord C1 exon
chr1:121647172-121647315
Coord A exon
chr1:121647081-121647171
Coord C2 exon
chr1:121646946-121647080
Length
91 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TTGATTTCTGTTTCTCTTAGATG
3' ss Score
9.12
Exon sequences
Seq C1 exon
GGGGCACAGTAGACGTTGTGGAGAGCGAGCCAGAAAATGATCATGCAGTTGGCTTACTTGATCAAAATAGCAGTATTCGTATTCCAAGGGAGAAAATGGTTTACATGACCGTAAATGATTCTCAGCACGAAGACGAAGATTTAA
Seq A exon
GTAAGTAGGTGGCTTTCATTTGGGAACAGGGATTTTCACTTTGAGCAGTGCAGTTCTTATTAATTTTTTTCTTGATTTCTGTTTCTCTTAG
Seq C2 exon
ATGTTGCAGAAATAGCCGATGAGGTTTATATGGAAGTGATAGTAGGGGAGGAAGATGCAGCAGTCGCCCATGAACAGCAAATTGATGACAATGAGATTAAAACTTTCATGCCAATAGCATGGGCAGCAGCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016327:ENSGALT00000026338:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.755 A=NA C2=0.217
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.6=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGCCAGAAAATGATCATGC
R:
CTGCTGCATCTTCCTCCCCTA
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]