MmuINT0180126 @ mm10
Intron Retention
Gene
ENSMUSG00000079509 | Zfx
Description
zinc finger protein X-linked [Source:MGI Symbol;Acc:MGI:99211]
Coordinates
chrX:94081337-94081968:-
Coord C1 exon
chrX:94081825-94081968
Coord A exon
chrX:94081487-94081824
Coord C2 exon
chrX:94081337-94081486
Length
338 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TCATCTAATTTTCTACTTAGATG
3' ss Score
7.22
Exon sequences
Seq C1 exon
GTGGAACTGTAGATATCGTCGAAAGTGAGCCTGAGAATGAGCATGGAGTTGAACTACTCGATCCAAACAATAGTATTCGCGTTCCCAGGGAAAAGATGGTTTATATGGCTGTTAACGACTCTCAGCAAGAAGAAGAAGAACTGA
Seq A exon
GTAAGTAGATGCTCTTTCTGTGTTCCTAATGTTTTCTCTGTCTCTTTTCAATGGTCAGTATTTGAAGGAAGTAAGCGGCATCATTTGAGAAATTACTATGCTGCCATGTTCTCAGGGAATCAGTATTCACTCATGTAGGTTTAGAATGTTTGCTACTTTAAAACTAGATTATGGTGAAAACCAAGAGAAGAGTTATTCAGCAAGTGTTTATTTTACAAAAGCTGTATTCTAGCTAATGTTTAGCTTCCCATTTGCATATTAGCTGAATTCAAATGAAAGTATCTCTCCTATGAGCTATGAGAACCTGGTCAGAGAAGTTCATCTAATTTTCTACTTAG
Seq C2 exon
ATGTCGCTGAGATTGCTGATGAAGTTTATATGGAAGTGATTGTTGGAGAGGAGGATGCTGCAGCTGCAGCCGCAGCCGCAGTGCATGAACAGCAAGTGGAGGACAACGAAATGAAAACCTTCATGCCGATTGCATGGGCAGCTGCTTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079509:ENSMUST00000088102:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.837 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=FE(14.3=100)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAACTGTAGATATCGTCGA
R:
CGTAAGCAGCTGCCCATGC
Band lengths:
294-632
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types