HsaINT0185639 @ hg19
Intron Retention
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:12869]
Coordinates
chrX:24225829-24226487:+
Coord C1 exon
chrX:24225829-24225972
Coord A exon
chrX:24225973-24226334
Coord C2 exon
chrX:24226335-24226487
Length
362 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
TTTTGTAACTTTCTACTTAGATG
3' ss Score
7.31
Exon sequences
Seq C1 exon
GTGGAACTGTAGACATTGTGGAGAGTGAGCCTGAGAATGATCATGGAGTTGAACTGCTTGATCAGAACAGCAGTATTCGTGTTCCCAGGGAAAAGATGGTTTATATGACTGTCAATGACTCTCAGCCAGAAGATGAAGATTTAA
Seq A exon
GTAAGTAGGTGGCCTTTTTGTGGGAGAAAATTTTATGTTTCTGGAGCTTTTAAGTGGCCAGTGTTTGAAATAAGTAGCATTATTTTAGAGATTATTATGCTACTACATTCCAAGGGAAACATCTTTGACTCTTTTATATATGCTTATGATGTTGCTTTAAAACCAAGTTATGGTGAAAGCCAAGAAGTAAATGATTCATTCAACAAATATGTATTGAGTGCTTACTACGTGAAAGCTATGTTCTAGGTATGTAATATTTGGACCATCTTTCCATTTTGTCTATTAACTGAATTCAAATAAAAACGTGTTTCCTGTGATCTCTGTAAACCTGGTCACAGAAGTTTTTGTAACTTTCTACTTAG
Seq C2 exon
ATGTTGCTGAAATCGCTGACGAAGTTTATATGGAAGTGATCGTAGGAGAGGAGGATGCTGCAGCAGCAGCGGCAGCCGCCGCCGTGCACGAGCAGCAAATGGATGACAATGAAATCAAAACCTTCATGCCGATTGCATGGGCAGCAGCTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889-ZFX:NM_003410:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.841 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PD(0.7=2.0),PF047048=Zfx_Zfy_act=PU(33.1=98.0)
A:
NA
C2:
PF047048=Zfx_Zfy_act=FE(14.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAACTGTAGACATTGTGGAGA
R:
CATAAGCTGCTGCCCATGC
Band lengths:
297-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)