BtaINT0164727 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36399070-36400435:-
Coord C1 exon
chr12:36400270-36400435
Coord A exon
chr12:36399196-36400269
Coord C2 exon
chr12:36399070-36399195
Length
1074 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
3' ss Seq
ATACTACGGCTTGATTACAGATG
3' ss Score
4.38
Exon sequences
Seq C1 exon
GTGCCAGTCCCTGTGTTTCTCCCTGCCCCCCTGGACAGTGGTGAGAAGACTGCTGTGCCCGAAGAGCTGAAAAGCACAGGTTCTTCAGATGCCCTGGGCACAGAGCTGCTGACCATGACGGACATGACTGAGGACGAGGGGAAGGCGGAAGGCGCCGACCTCCACA
Seq A exon
GTGAGCTCCCCACTGCCCAGGGTGGGCAGAGCGGGTGGGGGTCTGGGCTGGCCCCTCACTGAACTTCAGCCTGGGGAGGTGTGGGGGACGCACTGCTGCAGAGGTGATTGCAGGTTGAGACCCACATCAGATCTGCAGTTGCTCTGTGATGCCAAGCCCATGTTCAAGCCCAGCAATTTATAACCTATTTCAAACAGTCTCTTTTAATGGTTGACAAGATTTGGTTTTTAAAATCAAATCTAAATTAATGCTTGTTTCAGTGGGTGAGCTCAGACACAAAACTGACTTTATAGTAGGTTTTATAAATATCCAAACTGTTATTTTACGATGGTTATCCCCAGTTTTGTTTTATTCATTTATACGAAGAAAGTAAGTTGGATTATTTAAACCAGGGCTTGTGTTAGGGCAGTGCTGGCCAGATGGGGTAGCTGGATGCGTGTGTGCTGGATGCTTCTGTGTCTGAGCACGTTTCTCCATGTTCGTACTCCCGTTCCCCTCACCCAGAGCGCGGAGCTGTGTCAGCATGAATCCCTCCTAGAAAGGCTGTTATTTTGTACAACTTTTGTTTCCAGTGTGCACATGTCTGTTTCCCACCGCACCCTGAATTCAGTAAGATGCCTTTCTCAGTGGGTTTCAGTACAAAAGTGTTTAAAACAACTATTCAAAACACTAGAAGACAATTGTAAATAAGCATGTATTGAATGATGTGGAAAACCTAGGTCACAATTCAAAAAGAATGTTGAAAATTCCAGTTGTCTGTGCTCATAAGTTTATTTTTGACCAGAGATTGCTCTTAGAAATACTCTATAGAGTTGTTTACTCTTAAAACATGCTTTTTCTCTTTGTAGAGGCACAGTGAAAACTTACAGGATTGAAAGTTTTTGTGTATTCATGATTATCTAATTCAAAGCTTATAGTAGCTTATATTTGAAGGTAGATGCATGCTCTTTCCTTTTGTGATAAATTAAAGATTCTTATTTTGCATTTATAATTAAGTATCTTTTCACAGATTAAATATCAGTATTGTTGCAGTTTTCTGTTTTGTTTTCTGATGATACTACGGCTTGATTACAG
Seq C2 exon
ATGTCATTATTGAAACGGACATAATTGGTTCTGACCTCTTGAAGAGTGCTGAGCCGGAGACCCAGTCCAGCATGCCCGATGTGCCATATGAGCCAGACTTGGATATTGAAATAGACTTTCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.946 A=NA C2=0.674
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAGTCCCTGTGTTTCTC
R:
ATTTCAATATCCAAGTCTGGCTCA
Band lengths:
278-1352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development