RnoINT0169117 @ rn6
Intron Retention
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37211636-37214139:+
Coord C1 exon
chr15:37211636-37211807
Coord A exon
chr15:37211808-37214013
Coord C2 exon
chr15:37214014-37214139
Length
2206 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
ATATTATTGCTTGGTTACAGGTG
3' ss Score
8.53
Exon sequences
Seq C1 exon
GTGCCCGTTCCTGTGTTTTTGCCTGCTCCATTGGAGAACAGTGAGAAGATTCCTGCCTCAGTTGAGGACCTCAAAAGCAAAGTGTCTTCAGATCCTCTTGATACAGAATTGCTTACAATGACGGATATGATGACTGAAGAGGAGGGGAAAACAGAGGCATCTAATATCAACA
Seq A exon
GTAAGCTACACTATTCAGTTTGTCAGCAAGAGGTTTGGGGGACGGGGTCTATGTATTGTCATCTTTACAATACTTAAAGGCATATCCTGTAGCAGGAAAAAGGATTATAGCAGAAATATTTTATATTAAGAAATAACACACTTTGCCTCAGTGGTTAAGAGTACTAGTTACTCTTGCAGAAGACCTGGATCTGGTTCCCAGCACCCACATATCTTTCTTTAATTCCAGTTCCAGAGATTCCCCTGCCCTCTTCTGGCCTTCACAGGCATAAGACATGCAAGTGGTGCACAGATATACATACATGTACAATACCTGTACACATAAAACAACACAATTTTTTAATAAAGAGGAATACACACTCCAACTTGAACCAGGTTTGCTCTAATGCTAAGCTTGATCTCTAGTGGAATATTTTGTTTTATTTTGAGATGGAGACTTAGAATGTGTCCGAGGCAATAAACTCTTGGCCTCAAGAAGTCTTCAGTGTCATCTTCTGAAGTAGATAAGATTACCTTTTCTTAGAAACAAAAGTTGGGTGGGTTTGTTTGTTTGTTTGTTTTGGTAAGATTTCTTTATGTGTTTGAGAGTTGCATGTGTGTATGCCTGGCACTTGTGGAGTTCAGAAGATAGAGCATTATATCCTTTGAAAATGGAGTTATAGATTATGAGCCACCATGTAAGGGCTGGGAACTGAACTTTGGTCCTTTGCAAGAGCAGCCATTGCTTCTAATTCACTCACTCCCTATTTTTTTATTTTGTTTTGTTTTAATAGTAATAGGATTTGAATTCAGTTCAGTTATTTTTCTTAGGTTTCTAAGATTTTATTTTGTGATCGTTATTTCTAGTAATATTTTATTTTTTATACTAATCAAATATAATTTGCTTTATTATATTTATATTATATTTATCTAAACCAGAATTTTTCCTACTTTCTTTTAGGACACTGCTACATAGTGGTGTGATTTAATATGAGTGTTTTGTTGGGCAACTCTGTCCTTTTGAACATTTATTCCTTCCTATCCGTAGTCTTCTGGTAATATTTAGAATCCATTTTTAGTCCTGAACTGTCTAATTGCTTTTATACCAGAAGAAAAGTGTAGAAGTTGTTTTGCAGTATTCTCAGAGGTTGTCAAATGAAGTGGATTGTACTTAGTGGTATGATTTTTGTTGTTGTTTGTTTGTTTGTTTGTTTTTTGAGACAGGGTTTCTTTGTCTAATCTTGGCTGTCCTGGAATTAGTGCTGTAGACTAGGCTGGCCTGGATCTCATAGAGATCCCTTTGTCTCTACTTCCCAAGTGCTGGGGTTAGAGGCATGTGCCACCACCACCTAGTGTGGTGTTCATTTTTAATTAAGAATAAAATACAGACACCCACTTAGTCCCTGCGCTCAGGTGTTGGAACGTGAGTTCTAGGTGTGTCCAGTATATGACACTACATACCTCATGGGAAAAAGAATGGGAAGCCATGTCTGAATCCTTCAGAGAAGAGTTAGGTGGGTTTGTGAACGCCTTTGTTTCCTAATTATATACGTTTGTCTTAATTTCTGTCTGGAGACCTATTGTCATTCTAGTATATATTAGATAGAATGCATTTATAACTACGGCAAAACAGTTAAACAGTTCATCGAAACATATGGTAGCTATTAACAAGCATATACTAAGTATGTGTAAACTTGGTCAAAATTCAAAAATACTGTTTGAAAACCATAGTTGTTTATTTCCATAAGTTTATTTCTGATAAAGAATTGTTTTATGAATATTGACATGGGGAAATGGCCCACTCAGTAAAGTGCCTGCCATATAAGAATGAGATGAGAACCTGAATTTGGATCCTCCGAACCTATTTAAAAGATCAGGCACAGTGGCTTGTGTCTAACCCTAGTGTGAATTGACAGATTAGGAAGGGAAGATGGATCCATCAAACAAAGAAAAACACAGGACTCTGGTCAGCCTCTGGTCTCCACATGCATTCCTGTCTGGAAGCACTTACATCACACTGGCAAGTAATGTATGTGTCCTCCCCACCCCCACCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACGGGAGTTGTTTTATATTAACTTTTCTACTTTTTCCTTTGGGAGCTTAAGTACAGATACTATTAAGTTTTTTTTTTTTAATTTGATTTCTAATGATATTATTGCTTGGTTACAG
Seq C2 exon
GTGTAATTATTGAGACAGACATAATTGGCTCAGATCTTACAAAGAACTCTGACTCAGATATACAATCCAACATGCCCGATGTACCATATGAACCAGATTTGGATATTGAAATAGATTTCCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734:ENSRNOT00000011684:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=NA C2=0.698
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]