GgaINT0106903 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:183342549-183344977:-
Coord C1 exon
chr1:183344806-183344977
Coord A exon
chr1:183342675-183344805
Coord C2 exon
chr1:183342549-183342674
Length
2131 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
ACAAGATTTTTTCCTTTTTAATT
3' ss Score
-8.52
Exon sequences
Seq C1 exon
GTGCCAGTTCCCATTTTCTTGCCCACTACTCTGGACAGCACTGAGAAAATCTTTGCAGCAATAGAAGACCTGAGGGGCAAAGTGCCCTCAAATCCTCTGGAGACGGAGCTACTGACCTTGTCAGGGATGGTGCCTGAACATGAGGGAAAAGCAGAAGTTTCTGATGTGGCCA
Seq A exon
GTGAGTTAGTTACCATGTCTTTGGTTCTTTGGAGTGCTGGGATGTGTGTGAATAGGGAGAAATACTTTCTGATGTTAGGGAAGATTATTTCTGTACGACAGTGCTATTACTGAGCTCTTATATTAAATCAAAATCCTAATTGTTTAAGTAGTTTTAGAGCATTTTATCATGGTTAAAATACAGAAAACTTCCTCGAGTCTGCTCTGTGACTCTGATGTGCTGTACCCATAGCTTTGTTTTTAAAACAGCGACATACTCCTTGCTTGTCATGCATTTTCTCCTCAGTGTATCTCAAAACAAGCCGTAACAAGACCACTCTTCCTTCTAGAAACTGAGTCAAAACTTTAGGGGAGGTGTTTTCCATACTGAGTCTTAGAGGTGTGAACACAACTTTCTCTGAGCACAACAGGGACCTACCCTCTTTGTGGTAGTACTTTATTAGGCACATTTTACTTTGCACACGGGCTGCTAAAACTTAGGGAATTACGTATTTCACAAGTGGAACTGTGGTCAACAAAACCAGATTACCTAATGCTGTTCCGGCTCTTCATTAATCCTCATCTACATTTGTCATCCCCTTTAAGATAGTAATACGTCAGCTGATACATCGCTGAGGTTATGGTGTTGGAATAGTTTTCTAATTCTAGCAGCTTGTCTAAAAAGAGGGAACTCTCTCTGGGACAGTTTTACAGCCAAGTATCAAAAAATCCTTCATATCCTGTAATACTATTTTTGCAACGCACACATCTCTTGGTCCCTCTTTCCCAACTCTGCTCTTCTGTGTCCTCTCAGGATAATTTGCCTTCTCTTAATAAATCAGACTTTCAGATTTTTCTGTGACTGGGGTGAAGTTTATTTTCAAGCTCTTTCAACAGATGTTTCAATGGGCATTGATAAACAACACACACTTCAGACTTGGGCCTAATATATAGGAAGTCAGCAGGGCTGCAGAAATTGCCAGTGCCAGGAGGCTGCCATTCCTTCACAAAAGCTTGATGTTTCTGGTAGCACTGCAAGGTTTTGGAGTACTGTATCCAGTCCTGGGCTGCCTGTGCAAGATTGACAGGGACATACTGGAAAGAGTCCATCAGAGGGCCACAAAGATGCTGCAGGGGCTGGAATATCTCTCCCTGGTGGAGGTGCTGAGCGAGTTGGAACTGCTCAACCTGGAGAAGGCTCAGGGGGATCCCATCAGTGTCCAGAATTACCTGAAGAAAGAGTGACAAGAGAACAGAACCAGGCTCTTCTGGTAGTGCCCAGTGCCAGGACAGGAGGCAGTGGGTACAAATTGGAACACAGGAGGTTCCCTCTGAACACCAGGAGCACTGCTGTGCTGTGCAGATGATGGAGCACTGGCACAGGCTGCCCAGAGGCTGTGGGGTCTCCTCCTGGGGATCTTCCAAAGCCACCTAGATATGGTCCTGGGCATGGGAGGTCCCTGCCAGCCTCAGCCATTCTGTGATGTTGTAATTCTGTGAAAGACTGAAATGCAAAGCAAACTCTGCATCTTATAGCATCTTTGGCAACAAAGCCAGACAATTTTAGGCAGAGCTTTACCTTCAGAGGTCCCTTCCAACCTCAACCAATCTGTGTGTGATTCTGTGTTCTCATTTATAATTGCTTGCTCTCTTTTGCTACATACAGATAGCTGATTGAGTAGATGTGTGGGATCAGAGCCTGCTTTTTTGCAGAGAATTGAGAAAATCTATCCTTGCCAGAAGTTGTAAAGAGGTCAAGCTTTTGTTTTCCATCAGCCTGCCTTCCTTGTTTGCTTTTGTAGGATCCGTTTCACAGACTTAAAAGTCCACTCTGTTGCTGGCAAAATCATGTAGAGAAATAGCTACATTTTTCAAGCTTACTTGTATTCTGTGATTGTTTGATGTGATTCAGATTATCTGGTATTTGATTTTCTGTATGCTGAAATTCACATTAACAAAGGAGAGATGAGCTAGTACAGTTTTCTTTTAGGGAAATCAGATTGATGAAGTAAATCTGATACCTAAGAACAACAAAACCAAGGATGGTGATGAGCAGAAAAAGCAGCTTTAGAACCACTAAGATTATAATGCTTTATATCTGCCCATTTTTTACTAATCCATGTTAGTTAAAGTACAAGATTTTTTCCTTTTTA
Seq C2 exon
ATTTTATTTTATTTACAGGTGTGATAGCTGAGTCCAATCTACTAAATTCAGAAACAGAGGCACAGACAAGCTTGCCAGATGTTCCCTATGAACCAGACCTCGATATTGAAATAGACTTTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000027684:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.224 A=NA C2=0.419
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]