HsaINT0185982 @ hg19
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20635193-20637111:+
Coord C1 exon
chr13:20635193-20635364
Coord A exon
chr13:20635365-20636985
Coord C2 exon
chr13:20636986-20637111
Length
1621 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
3' ss Seq
ATAATATGGATTGATTTCAGGTG
3' ss Score
6.86
Exon sequences
Seq C1 exon
GTGCCAGTTCCTGTTTTTCTGCCTGCTCCATTGGACAGCAGTGAGAAGATTCCTGCAGCAATTGAGGAGCTAAAAAGCAAGGTTTCTTCAGATGCTCTTGATACAGAGTTGCTTACAATGACGGATATGATGAGTGAAGACGAGGGGAAAACAGAGACAACCAACATCAACA
Seq A exon
GTGAGCTACACTAAATTATACCTTGCGAATAAGTGTTAACATTGGTTATTTATAAGTATTGTTACAGTACTTTCCAGGGCATATCATTTTGTTTCAACTTATGTGGGGGTGAGGAAAGCATTGTAACAAAAATGTTTTTTATATTAAGAGATCTACACTGTATTTAGCCAGGTGCCCTCAGACAGATATCCGAAGCAGGAATTTGGTCTTTGGTCTCTGTTTTAAGCAGGATTTGACTTGTAAAATCAACTCAAAATTATTCTTGTTAATGGAGTAGTGCTGATGCAAAACTATAATAACTTGTAGTAGACTCTAATGATGATCAAAACTCTTATTTTGTAATAGTTATCCCTAGTTTTTTGTTTTGTTTTGTTTTTTTTTTTAGATGAACTCTTGCTCTGTTGCCCAGGGTGGAGTGTAGTAGCATGATCCCGGTTCACTGAGATCTCTGCCTCCTGGGTTCAAGCTATGCTTCTGCCTCAGCCTCCTGAGTAGCTGGAATTACAGGCACGTGCCACCACGCCCAGCCAATTTTTGTCTTTTTAGTAGAGACAGGGCTTCCCTATGTTGGCCAGGCTGATCTCAAACTCCTGACCTCAGGTGATCCACCTGCTTCCCAAAGTGCTGGTATTACAGGTGTGAGCTACCACACCCAGCCCCTAGTTTTCTTTTATTGCTTATACTAATAAAATAATTTGCATTATCTAAACCAGAGTTTATCTTAACCTCTGTTAGGGCAGTGCTTGCGCTACATGGTATAACGTGATGAGTGTGTTGTGGATGGTTCTAAGTCACTTAGAATATTTATTTTCCACCCTTAACCCTCTCTTGATACCCAAAGTCCTATTTCAACCTTGAGCTAATTCTTACCCTTACCCTAGAGGACAATCAAAATACTATAATTTTCTCTGGATTTAATAATGAGACAGTGTTTTTGAAGCACTGTGGTAAGGAGTTGTGAAATTAGTGGGTTGCAACCAGTGTTTTTGTTTAAGAAAAGAAAAAGCTAAGTGGAATAGGGTAAGAGAAATGACAGTGTGAATCCCTCATAGAAAGGGTAAGTATTATTTTGTGAAACCAGTGTGTATACAGATGTCTTTCTGTTCCCCACCATCACCTTGCAGTATGTGCTGGATAAAATGCATTTCTTGCCATGATTACAACACAAAAACACTTGAAAGCAACTGATCGAACCATTAAAAGGCAGTTGTTAATATGCATATATTGAACAATCTGAGAAACCTGGGTCAAAATTCAAAGAGTATTGAAAACTACAGTTGTCTACCCTCATTAGTTTATTTTTGACAAAAAGTTGCTTTTAGAAATACTTTACTTGTTGAAGTTGTTTTACTATCAAAGCATACCTATTAGCTTTTGAAGGGAGTCCTCCTGTAAAATTTATAGGATTAAAAGTTTTCATGTGCTTGTGACTAATTATGAGGTTTATAGTGGTTTACATTTTGAGATAGTTATATATATAATATGCCCTTTTCTTTTGTGACATTATACGTATTTTTTTATATTGCATTTAAAATTAAATGACTTGCTTTTGCCAGATTAAATACAGATACCATTGGGGTTTTCTGTTTTGATTCCTAATGATAATATGGATTGATTTCAG
Seq C2 exon
GTGTAATTATTGAAACAGATATAATTGGTTCAGACCTTTTGAAGAACTCTGACCCAGAGACACAGTCCAGCATGCCTGATGTACCATATGAACCAGATTTGGATATCGAAATAGATTTTCCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-ZMYM2:NM_003453:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.672 A=NA C2=0.644
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTTCCTGTTTTTCTGCC
R:
TCTGGGAAAATCTATTTCGATATCCA
Band lengths:
295-1916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)