GgaINT0106903 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:178286432-178288860:-
Coord C1 exon
chr1:178288689-178288860
Coord A exon
chr1:178286540-178288688
Coord C2 exon
chr1:178286432-178286539
Length
2149 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TAATTTTATTTTATTTACAGGTG
3' ss Score
9
Exon sequences
Seq C1 exon
GTGCCAGTTCCCATTTTCTTGCCCACTACTCTGGACAGCACTGAGAAAATCTTTGCAGCAATAGAAGACCTGAGGGGCAAAGTGCCCTCAAATCCTCTGGAGACGGAGCTACTGACCTTGTCAGGGATGGTGCCTGAACATGAGGGAAAAGCAGAAGTTTCTGATGTGGCCA
Seq A exon
GTGAGTTAGTTACCATGTCTTTGGTTCTTTGGAGTGCTGGGATGTGTGTGAATAGGGAGAAATACTTTCTGATGTTAGGGAAGATTATTTCTGTACGACAGTGCTATTACTGAGCTCTTATATTAAATCAAAATCCTAATTGTTTAAGTAGTTTTAGAGCATTTTATCATGGTTAAAATACAGAAAACTTCCTCGAGTCTGCTCTGTGACTCTGATGTGCTGTACCCATAGCTTTGTTTTTAAAACAGCGACATACTCCTTGCTTGTCATGCATTTTCTCCTCAGTGTATCTCAAAACAAGCCGTAACAAGACCACTCTTCCTTCTAGAAACTGAGTCAAAACTTTAGGGGAGGTGTTTTCCATACTGAGTCTTAGAGGTGTGAACACAACTTTCTCTGAGCACAACAGGGACCTACCCTCTTTGTGGTAGTACTTTATTAGGCACATTTTACTTTGCACACGGGCTGCTAAAACTTAGGGAATTACGTATTTCACAAGTGGAACTGTGGTCAACAAAACCAGATTACCTAATGCTGTTCCGGCTCTTCATTAATCCTCATCTACATTTGTCATCCCCTTTAAGATAGTAATACGTCAGCTGATACATCGCTGAGGTTATGGTGTTGGAATAGTTTTCTAATTCTAGCAGCTTGTCTAAAAAGAGGGAACTCTCTCTGGGACAGTTTTACAGCCAAGTATCAAAAAATCCTTCATATCCTGTAATACTATTTTTGCAACGCACACATCTCTTGGTCCCTCTTTCCCAACTCTGCTCTTCTGTGTCCTCTCAGGATAATTTGCCTTCTCTTAATAAATCAGACTTTCAGATTTTTCTGTGACTGGGGTGAAGTTTATTTTCAAGCTCTTTCAACAGATGTTTCAATGGGCATTGATAAACAACACACACTTCAGACTTGGGCCTAATATATAGGAAGTCAGCAGGGCTGCAGAAATTGCCAGTGCCAGGAGGCTGCCATTCCTTCACAAAAGCTTGATGTTTCTGGTAGCACTGCAAGGTTTTGGAGTACTGTATCCAGTCCTGGGCTGCCTGTGCAAGATTGACAGGGACATACTGGAAAGAGTCCATCAGAGGGCCACAAAGATGCTGCAGGGGCTGGAATATCTCTCCCTGGTGGAGGTGCTGAGCGAGTTGGAACTGCTCAACCTGGAGAAGGCTCAGGGGGATCCCATCAGTGTCCAGAATTACCTGAAGAAAGAGTGACAAGAGAACAGAACCAGGCTCTTCTGGTAGTGCCCAGTGCCAGGACAGGAGGCAGTGGGTACAAATTGGAACACAGGAGGTTCCCTCTGAACACCAGGAGCACTGCTGTGCTGTGCAGATGATGGAGCACTGGCACAGGCTGCCCAGAGGCTGTGGGGTCTCCTCCTGGGGATCTTCCAAAGCCACCTAGATATGGTCCTGGGCATGGGAGGTCCCTGCCAGCCTCAGCCATTCTGTGATGTTGTAATTCTGTGAAAGACTGAAATGCAAAGCAAACTCTGCATCTTATAGCATCTTTGGCAACAAAGCCAGACAATTTTAGGCAGAGCTTTACCTTCAGAGGTCCCTTCCAACCTCAACCAATCTGTGTGTGATTCTGTGTTCTCATTTATAATTGCTTGCTCTCTTTTGCTACATACAGATAGCTGATTGAGTAGATGTGTGGGATCAGAGCCTGCTTTTTTGCAGAGAATTGAGAAAATCTATCCTTGCCAGAAGTTGTAAAGAGGTCAAGCTTTTGTTTTCCATCAGCCTGCCTTCCTTGTTTGCTTTTGTAGGATCCGTTTCACAGACTTAAAAGTCCACTCTGTTGCTGGCAAAATCATGTAGAGAAATAGCTACATTTTTCAAGCTTACTTGTATTCTGTGATTGTTTGATGTGATTCAGATTATCTGGTATTTGATTTTCTGTATGCTGAAATTCACATTAACAAAGGAGAGATGAGCTAGTACAGTTTTCTTTTAGGGAAATCAGATTGATGAAGTAAATCTGATACCTAAGAACAACAAAACCAAGGATGGTGATGAGCAGAAAAAGCAGCTTTAGAACCACTAAGATTATAATGCTTTATATCTGCCCATTTTTTACTAATCCATGTTAGTTAAAGTACAAGATTTTTTCCTTTTTAATTTTATTTTATTTACAG
Seq C2 exon
GTGTGATAGCTGAGTCCAATCTACTAAATTCAGAAACAGAGGCACAGACAAGCTTGCCAGATGTTCCCTATGAACCAGACCTCGATATTGAAATAGACTTTCCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000043420:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.397 A=NA C2=0.622
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]