BtaINT0164728 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36398178-36399195:-
Coord C1 exon
chr12:36399070-36399195
Coord A exon
chr12:36398273-36399069
Coord C2 exon
chr12:36398178-36398272
Length
797 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TCTTCTGATTTGATTGTCAGCTG
3' ss Score
5.49
Exon sequences
Seq C1 exon
ATGTCATTATTGAAACGGACATAATTGGTTCTGACCTCTTGAAGAGTGCTGAGCCGGAGACCCAGTCCAGCATGCCCGATGTGCCATATGAGCCAGACTTGGATATTGAAATAGACTTTCCCAGAG
Seq A exon
GTACTGTGCATGCAGTTTTGCTCTTGGAGTATGAAGTGTGTTTCTAGACTTTAGCTATGGGGTCATCGTTGTGGTTATGAAACAATCTCGTGTTCATGTCATTGCCTGTACTGTTATTTGTCTTTTTCATGCAAATAAAACTCAACAGTTTTCTTCCAAAAGGAAGCACATGTTGAATTGTAGGAGCTTAATTAACAGGATTTCCCAGAGCCTTAAAAACCTTAAAACTATTTCATTATAGGAACTTTTAGAGATAAAGAATAAAGAAGTGTTTGGTGTCTTTTTAAAAATTTAAATAAAATATTGATAGTATTTTTCTTAAAACCTTTTTGAAAATTAAGTTAACCTTCACAGGGAATAAAGATGTGTTTAGGTCTTTTGTTGTAAAAGAAGTGTGTTCTGTTTTTCATTATTTTCTTAATCTACTTAAGGCCAGTGAGCGTACTGAACAGGATATAAAGCGTTTAACTTTGGAAAAGATGTAATAGCTTGAAATAGATTTGTGCTGAGATCATGTAGATCCTGTAATTGAATTTCAGGTTTTAGTAATTTTTCTATCACACATTCCGTGAAATTCCATGTTGATATGCATTATACTTGTGTTTTAAGAGTCTAAACAGATGTTATTAGATCTCATAGATCAGGTTAGGTAGAGAAATGGTTCTTCAGCCAGCACAGGCTGCCCTGTGCGTGGTATTGTGCAGAGTCAGGGATTGGTCCTTTTGTTGGTTGAGTTTATGTGATGCAAGCCTGTGCTATTATGTTTGGAGTGAAAGTTCTTCTGATTTGATTGTCAG
Seq C2 exon
CTGCTGAGGAGCTTGACATGGAAAATGAGTTTTTATTACCACCTGTTTTTGGAGAAGAATATGAGGAACAGCCTAGACCTCGATCTAAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=NA C2=0.719
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATTATTGAAACGGACATAATTGG
R:
TTTTAGATCGAGGTCTAGGCTGT
Band lengths:
214-1011
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development